Merge pull request #3766 from nf-core/update/mqc1.31

mashehu · web-flow · commit 850944f6203f · 2025-10-07T10:07:07.000+02:00
diff --git a/.github/snapshots/adaptivecard.nf.test.snap b/.github/snapshots/adaptivecard.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/changelog.nf.test.snap b/.github/snapshots/changelog.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/ci.nf.test.snap b/.github/snapshots/ci.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/citations.nf.test.snap b/.github/snapshots/citations.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/code_linters.nf.test.snap b/.github/snapshots/code_linters.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/codespaces.nf.test.snap b/.github/snapshots/codespaces.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/default.nf.test.snap b/.github/snapshots/default.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/documentation.nf.test.snap b/.github/snapshots/documentation.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/email.nf.test.snap b/.github/snapshots/email.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/fastqc.nf.test.snap b/.github/snapshots/fastqc.nf.test.snap
@@ -9,9 +9,9 @@
             [
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_software_versions.txt",
diff --git a/.github/snapshots/github_badges.nf.test.snap b/.github/snapshots/github_badges.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/gitpod.nf.test.snap b/.github/snapshots/gitpod.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/gpu.nf.test.snap b/.github/snapshots/gpu.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/igenomes.nf.test.snap b/.github/snapshots/igenomes.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/license.nf.test.snap b/.github/snapshots/license.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/nf_core_configs.nf.test.snap b/.github/snapshots/nf_core_configs.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/nf_schema.nf.test.snap b/.github/snapshots/nf_schema.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/rocrate.nf.test.snap b/.github/snapshots/rocrate.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/seqera_platform.nf.test.snap b/.github/snapshots/seqera_platform.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/slackreport.nf.test.snap b/.github/snapshots/slackreport.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/.github/snapshots/vscode.nf.test.snap b/.github/snapshots/vscode.nf.test.snap
@@ -25,7 +25,6 @@
                 "fastqc/SAMPLE3_SE_2_fastqc.zip",
                 "multiqc",
                 "multiqc/multiqc_data",
-                "multiqc/multiqc_data/BETA-multiqc.parquet",
                 "multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
                 "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
                 "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
@@ -39,6 +38,7 @@
                 "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_data/llms-full.txt",
                 "multiqc/multiqc_data/multiqc.log",
+                "multiqc/multiqc_data/multiqc.parquet",
                 "multiqc/multiqc_data/multiqc_citations.txt",
                 "multiqc/multiqc_data/multiqc_data.json",
                 "multiqc/multiqc_data/multiqc_fastqc.txt",
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -9,6 +9,7 @@
 - Bump nf-schema to 2.5.0 and update the help message creation to be compatible with future Nextflow versions ([#3743](https://github.com/nf-core/tools/pull/3743))
 - Bump minimum Nextflow version to 25.04.0 ([#3743](https://github.com/nf-core/tools/pull/3743))
 - Explicitly declare conda-forge as a channel in the conda setup for GitHub CI for nf-test ([#3764](https://github.com/nf-core/tools/pull/3764))
+- Update multiqc to 1.31 ([#3766](https://github.com/nf-core/tools/pull/3766))
 - Update charliecloud URL ([#3757](https://github.com/nf-core/tools/pull/3757))
 - Fix: Add NXF_VERSION environment variable to nf-test workflow ([#3770](https://github.com/nf-core/tools/pull/3770))
 - Template: Update nextflow.config to use environment variable for `hook_url` ([#3756](https://github.com/nf-core/tools/pull/3756))
diff --git a/nf_core/pipeline-template/modules.json b/nf_core/pipeline-template/modules.json
@@ -13,7 +13,7 @@
                     }{% endif %}{%- if multiqc %}{% if fastqc %},{% endif %}
                     "multiqc": {
                         "branch": "master",
-                        "git_sha": "c9a31c472ef2d86802eb44f27322955849859361",
+                        "git_sha": "e10b76ca0c66213581bec2833e30d31f239dec0b",
                         "installed_by": ["modules"]
                     }
                     {%- endif %}
diff --git a/nf_core/pipeline-template/modules/nf-core/multiqc/environment.yml b/nf_core/pipeline-template/modules/nf-core/multiqc/environment.yml
diff --git a/nf_core/pipeline-template/modules/nf-core/multiqc/main.nf b/nf_core/pipeline-template/modules/nf-core/multiqc/main.nf
diff --git a/nf_core/pipeline-template/modules/nf-core/multiqc/tests/main.nf.test.snap b/nf_core/pipeline-template/modules/nf-core/multiqc/tests/main.nf.test.snap
diff --git a/nf_core/pipeline-template/tests/.nftignore b/nf_core/pipeline-template/tests/.nftignore
diff --git a/tests/pipelines/__snapshots__/test_create_app/test_github_question.svg b/tests/pipelines/__snapshots__/test_create_app/test_github_question.svg
