Merge pull request #3791 from nf-core/renovate/astral-sh-ruff-pre-commit-0.x

Author: mashehu

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.12.7
+    rev: v0.13.3
     hooks:
       - id: ruff-check # linter
         args: [--fix, --exit-non-zero-on-fix] # sort imports and fix

CHANGELOG.md

@@ -65,6 +65,7 @@
 - Update pre-commit hook pre-commit/mirrors-mypy to v1.18.2 ([#3792](https://github.com/nf-core/tools/pull/3792))
 - Update python:3.13-slim Docker digest to 5f55cdf ([#3796](https://github.com/nf-core/tools/pull/3796))
 - Update GitHub Actions ([#3795](https://github.com/nf-core/tools/pull/3795))
+- Update pre-commit hook astral-sh/ruff-pre-commit to v0.13.3 ([#3791](https://github.com/nf-core/tools/pull/3791))
 - Update pre-commit hook pre-commit/pre-commit-hooks to v6 ([#3797](https://github.com/nf-core/tools/pull/3797))
 
 ## [v3.3.2 - Tungsten Tamarin Patch 2](https://github.com/nf-core/tools/releases/tag/3.3.2) - [2025-07-08]