bump version to 3.3.2 (#3666)

Author: mashehu

.gitpod.yml

@@ -1,4 +1,4 @@
-image: nfcore/gitpod:dev
+image: nfcore/gitpod:latest
 tasks:
   - name: install current state of nf-core/tools and setup pre-commit
     command: |

CHANGELOG.md

@@ -1,6 +1,6 @@
 # nf-core/tools: Changelog
 
-## v3.3.2dev
+## [v3.3.2dev - Tungsten Tamarin Patch 2](https://github.com/nf-core/tools/releases/tag/3.3.2) - [2025-07-08]
 
 ### Template
 
@@ -13,6 +13,8 @@
 - Fix link to nf-test GHA in README.md ([#3630](https://github.com/nf-core/tools/pull/3630))
 - Add accelerator directive for GPU-enabled processes ([#3632](https://github.com/nf-core/tools/pull/3632))
 - Update dependency prettier to v3.6.0 ([#3641](https://github.com/nf-core/tools/pull/3641)) and 3.6.2 ([#3646](https://github.com/nf-core/tools/pull/3646))
+- Add opt-in feature `gpu` ([#3562](https://github.com/nf-core/tools/pull/3562))
+- Update zentered/bluesky-post-action action to v0.3.0 ([#3626](https://github.com/nf-core/tools/pull/3626))
 
 ### Linting
 
@@ -28,25 +30,24 @@
 
 ### General
 
-- Add conda cache dir ([#3610](https://github.com/nf-core/tools/pull/3610))
 - update id of ruff hook in pre-commit config ([#3621](https://github.com/nf-core/tools/pull/3621))
-- Drop python 3.8, add tests with python 3.13 ([#3538](https://github.com/nf-core/tools/pull/3538))
 - Fixes a bug with the test-datasets subcommand [#3617](https://github.com/nf-core/tools/issues/3617)
-- Update pre-commit hook pre-commit/mirrors-mypy to v1.16.1 ([#3624](https://github.com/nf-core/tools/pull/3624))
 - Pin python Docker tag to f2fdaec ([#3623](https://github.com/nf-core/tools/pull/3623))
-- Update pre-commit hook astral-sh/ruff-pre-commit to v0.12.0 ([#3627](https://github.com/nf-core/tools/pull/3627))
-- Update zentered/bluesky-post-action action to v0.3.0 ([#3626](https://github.com/nf-core/tools/pull/3626))
-- Update dependency textual to v3.5.0 ([#3636](https://github.com/nf-core/tools/pull/3636))
 - Make changelog bot push to correct remote ([#3638](https://github.com/nf-core/tools/pull/3638))
 - Give unique button ids to help buttons in create app ([#3645](https://github.com/nf-core/tools/pull/3645))
 - Parallelize pytest runs and speed up coverage step ([#3635](https://github.com/nf-core/tools/pull/3635))
 - Update gitpod/workspace-base Docker digest to 77021d8 ([#3649](https://github.com/nf-core/tools/pull/3649))
-- Update pre-commit hook astral-sh/ruff-pre-commit to v0.12.1 ([#3648](https://github.com/nf-core/tools/pull/3648))
 - Update error message for rocrate_readme_sync ([#3652](https://github.com/nf-core/tools/pull/3652))
 - Update `nf-core modules info` command after `meta.yml` restructuring ([#3659](https://github.com/nf-core/tools/pull/3659))
 - Enable parsing of multi-line config values ([#3629](https://github.com/nf-core/tools/pull/3629))
+
+#### Version updates
+
+- Drop python 3.8, add tests with python 3.13 ([#3538](https://github.com/nf-core/tools/pull/3538))
 - Update python:3.13-slim Docker digest to 6544e0e ([#3663](https://github.com/nf-core/tools/pull/3663))
-- Update pre-commit hook astral-sh/ruff-pre-commit to v0.12.2 ([#3661](https://github.com/nf-core/tools/pull/3661))
+- Update pre-commit hook astral-sh/ruff-pre-commit to v0.12.2 ([#3627](https://github.com/nf-core/tools/pull/3627),[#3648](https://github.com/nf-core/tools/pull/3648), [#3661](https://github.com/nf-core/tools/pull/3661))
+- Update dependency textual to v3.5.0 ([#3636](https://github.com/nf-core/tools/pull/3636))
+- Update pre-commit hook pre-commit/mirrors-mypy to v1.16.1 ([#3624](https://github.com/nf-core/tools/pull/3624))
 
 ## [v3.3.1 - Tungsten Tamarin Patch](https://github.com/nf-core/tools/releases/tag/3.3.1) - [2025-06-02]
 
@@ -117,7 +118,6 @@ We also enabled to install subworkflows with modules from different remotes.
 - Handling issue with arity #3530 ([#3539](https://github.com/nf-core/tools/pull/3539))
 - GitHub action for nightly tests with Nextflow from source ([#3553](https://github.com/nf-core/tools/pull/3553))
 - Update CI to test template pipelines with nf-test ([#3559](https://github.com/nf-core/tools/pull/3559))
-- Add opt-in feature `gpu` ([#3562](https://github.com/nf-core/tools/pull/3562))
 - Use secret for notification email on nextflow nightly builds ([#3576](https://github.com/nf-core/tools/pull/3576))
 - Use pdiff from setup-nf-test ([#3578](https://github.com/nf-core/tools/pull/3578))
 

setup.py

@@ -2,7 +2,7 @@
 
 from setuptools import find_packages, setup
 
-version = "3.3.2dev"
+version = "3.3.2"
 
 with open("README.md") as f:
     readme = f.read()