Merge pull request #3274 from mahesh-panchal/gitpod_miniforge

Gitpod miniforge

Author: mahesh-panchal

CHANGELOG.md

@@ -35,6 +35,7 @@
 - Update GitHub Actions ([#3237](https://github.com/nf-core/tools/pull/3237))
 - add `--dir/-d` option to schema commands ([#3247](https://github.com/nf-core/tools/pull/3247))
 - Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.1 ([#3250](https://github.com/nf-core/tools/pull/3250))
+- Update Gitpod image to use Miniforge instead of Miniconda([#3274](https://github.com/nf-core/tools/pull/3274))
 
 ## [v3.0.2 - Titanium Tapir Patch](https://github.com/nf-core/tools/releases/tag/3.0.2) - [2024-10-11]
 

nf_core/gitpod/gitpod.Dockerfile

@@ -23,9 +23,9 @@ RUN apt-get update --quiet && \
     add-apt-repository -y ppa:apptainer/ppa && \
     apt-get update --quiet && \
     apt-get install --quiet --yes apptainer && \
-    wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
-    bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda && \
-    rm Miniconda3-latest-Linux-x86_64.sh && \
+    wget --quiet https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh && \
+    bash Miniforge3-Linux-x86_64.sh -b -p /opt/conda && \
+    rm Miniforge3-Linux-x86_64.sh && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/*