Disease Ontology alternate IDs not supported by prepare_C2M2_submission.py #332
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This is just an observation (not necessarily Q&A) intended to be of use to other submitters. I notice that alternate ID DOID:1173 is not allowed by required script prepare_C2M2_submission.py, with error: |
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Replies: 3 comments
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I will be able look into this in detail over the weekend -- sorry for delayed reply, stay tuned |
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We can't accept alternate IDs as primary IDs in submissions; submitters must use the latter. The prep script doesn't load alt_ids into C2M2 synonyms lists, however, and there's certainly no problem with doing that, so I'll add that functionality to the next script release (3/31) in order to support term search by alt ID. |
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Update: alt IDs are now included as synonyms. |
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We can't accept alternate IDs as primary IDs in submissions; submitters must use the latter.
The prep script doesn't load alt_ids into C2M2 synonyms lists, however, and there's certainly no problem with doing that, so I'll add that functionality to the next script release (3/31) in order to support term search by alt ID.