-
Notifications
You must be signed in to change notification settings - Fork 7
TableInfo: file_describes_subject.tsv
Amanda Charbonneau edited this page Mar 4, 2021
·
6 revisions
| Field | Field Description | Required? | Attributes | Extra Info |
|---|---|---|---|---|
| file_id_namespace | Identifier namespace for this file | Required if table is populated | If a row has this value, it must have a value for every column Value type is string |
For each row this will be the value of id_namespace in file.tsv for the file that describes this subject. If your program has not implemented multiple id_namespaces, this will be exactly the same for all rows and in the collection_id_namespace column |
| file_local_id | The ID of this file | Required if table is populated | If a row has this value, it must have a value for every column Value type is string |
For each row this will be the value of local_id in file.tsv for the file that describes this subject. If a subject has multiple files, it should have multiple rows. Concatenating values in this column will invalidate your submission
|
| subject_id_namespace | Identifier namespace for this subject. | Required if table is populated | If a row has this value, it must have a value for every column Value type is string |
For each row this will be the value of id_namespace in subject.tsv for the subject associated with this file. If your program has not implemented multiple id_namespaces, this will be exactly the same for all rows and in the collection_id_namespace column |
| subject_local_id | The ID of this subject | Required if table is populated | If a row has this value, it must have a value for every column Value type is string |
For each row this will be the value of local_id in subject.tsv for the subject associated with this file. |
-
Tutorials
-
C2M2 Table Guide
-
Table Summary
- analysis_type.tsv
- anatomy.tsv
- assay_type.tsv
- biofluid.tsv
- biosample.tsv
- biosample_disease.tsv
- biosample_from_subject.tsv
- biosample_gene.tsv
- biosample_in_collection.tsv
- biosample_protein.tsv
- biosample_ptm.tsv
- biosample_substance.tsv
- collection.tsv
- collection_anatomy.tsv
- collection_biofluid.tsv
- collection_compound.tsv
- collection_defined_by_project.tsv
- collection_disease.tsv
- collection_gene.tsv
- collection_in_collection.tsv
- collection_phenotype.tsv
- collection_protein.tsv
- collection_ptm.tsv
- collection_substance.tsv
- collection_taxonomy.tsv
- compound.tsv
- data_type.tsv
- dcc.tsv (formerly
primary_dcc_contact.tsv - disease.tsv
- domain_location.tsv
- file.tsv
- file_describes_biosample.tsv
- file_describes_collection.tsv
- file_describes_subject.tsv
- file_format.tsv
- file_in_collection.tsv
- gene.tsv
- id_namespace.tsv
- ncbi_taxonomy.tsv
- phenotype.tsv
- phenotype_disease.tsv
- phenotype_gene.tsv
- project.tsv
- project_in_project.tsv
- protein.tsv
- protein_gene.tsv
- ptm.tsv
- ptm_type.tsv
- ptm_subtype.tsv
- sample_prep_method.tsv
- subject.tsv
- subject_disease.tsv
- subject_in_collection.tsv
- subject_phenotype.tsv
- subject_race.tsv
- subject_role_taxonomy.tsv
- subject_substance.tsv
- substance.tsv
- Reference Tables
-
Table Summary