-
Notifications
You must be signed in to change notification settings - Fork 7
TableInfo: project.tsv
abradyIGS edited this page Sep 3, 2021
·
26 revisions
The C2M2 project entity is a generic container for groups of files, biosamples and/or subjects that are part of the same research endeavor.
At least one project must be defined for each program. The project.tsv table will have one row for each project you define for your program.
Please see the technical documentation for a complete treatment of how C2M2 projects are used, paying special attention to both the section on the project_in_project.tsv (subproject containment) table and also the section describing the project foreign key requirement for the primary_dcc_contact.tsv table.
| Field | Field Description | Required? | Field Value Type | Extra Info |
|---|---|---|---|---|
| id_namespace | A CFDE-cleared identifier representing the top-level data space containing this project [part 1 of 2-component composite primary key] | Required | string |
id_namespace is a unique URI prefix pre-registered with CFDE and attached to your program (or a subset of your program) that identifies anything labeled with it as belonging to you. Please see the technical documentation for a full discussion of how this information is built and used. |
| local_id | An identifier representing this project, unique within this id_namespace [part 2 of 2-component composite primary key] | Required | string | The string formed by concatenating the id_namespace and local_id field values must be unique for each row in this table. Please see the technical documentation for a full discussion of how this information is to be used. |
| persistent_id | A persistent, resolvable (not necessarily retrievable) URI or compact ID permanently attached to this project | Optional | string | Meant to serve as a permanent address to which landing pages (which summarize metadata associated with this project) and other relevant annotations and functions can optionally be attached. Please see the technical documentation for a full discussion of how this information is to be used. |
| creation_time | An ISO 8601 -; RFC 3339 (subset)-compliant timestamp documenting this file's creation time: YYYY-MM-DDTHH:MM:SS±NN:NN | Non-required: Any number of rows after the header can be filled | Value must be datetime | Example valid dates: 2021-01-082021-01-08T00:45:40Z2021-01-08T00:45:40+00:00
|
| abbreviation | A very short display label for this project | Optional | string | Should not exceed 10 characters; can only contain 0-9, a-z, A-Z and underscore ("_") |
| name | A short, human-readable, machine-read-friendly label for this project | Required | string | Must be unique to each project. |
| description | A human-readable description of this project | Non-required: Any number of rows after the header can be filled | Value type is string | This is the display description for this project in the portal |
-
Tutorials
-
C2M2 Table Guide
-
Table Summary
- analysis_type.tsv
- anatomy.tsv
- assay_type.tsv
- biofluid.tsv
- biosample.tsv
- biosample_disease.tsv
- biosample_from_subject.tsv
- biosample_gene.tsv
- biosample_in_collection.tsv
- biosample_protein.tsv
- biosample_ptm.tsv
- biosample_substance.tsv
- collection.tsv
- collection_anatomy.tsv
- collection_biofluid.tsv
- collection_compound.tsv
- collection_defined_by_project.tsv
- collection_disease.tsv
- collection_gene.tsv
- collection_in_collection.tsv
- collection_phenotype.tsv
- collection_protein.tsv
- collection_ptm.tsv
- collection_substance.tsv
- collection_taxonomy.tsv
- compound.tsv
- data_type.tsv
- dcc.tsv (formerly
primary_dcc_contact.tsv - disease.tsv
- domain_location.tsv
- file.tsv
- file_describes_biosample.tsv
- file_describes_collection.tsv
- file_describes_subject.tsv
- file_format.tsv
- file_in_collection.tsv
- gene.tsv
- id_namespace.tsv
- ncbi_taxonomy.tsv
- phenotype.tsv
- phenotype_disease.tsv
- phenotype_gene.tsv
- project.tsv
- project_in_project.tsv
- protein.tsv
- protein_gene.tsv
- ptm.tsv
- ptm_type.tsv
- ptm_subtype.tsv
- sample_prep_method.tsv
- subject.tsv
- subject_disease.tsv
- subject_in_collection.tsv
- subject_phenotype.tsv
- subject_race.tsv
- subject_role_taxonomy.tsv
- subject_substance.tsv
- substance.tsv
- Reference Tables
-
Table Summary