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TableInfo: project.tsv
abradyIGS edited this page Feb 14, 2022
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The C2M2 project entity is a generic container for groups of files, biosamples and/or subjects that are part of the same research endeavor.
At least one project must be defined as the root (top-level project) for each ID namespace registered with CFDE. The project.tsv table will have one row for each project you define. Subprojects can be assigned using the project_in_project.tsv table.
| Field | Field Description | Required? | Field Value Type | Extra Info |
|---|---|---|---|---|
| id_namespace | A CFDE-cleared identifier representing the top-level data space containing this project [part 1 of 2-component composite primary key] | Required | string |
id_namespace is a unique URI prefix pre-registered with CFDE and attached to your program (or a subset of your program) that identifies anything labeled with it as belonging to you. Please see the technical documentation for a full discussion of how this information is built and used. |
| local_id | An identifier representing this project, unique within this id_namespace [part 2 of 2-component composite primary key] | Required | string | The string formed by concatenating the id_namespace and local_id field values must be unique for each row in this table. Please see the technical documentation for a full discussion of how this information is to be used. |
| persistent_id | A persistent, resolvable (not necessarily retrievable) URI or compact ID permanently attached to this project | Optional | string | Meant to serve as a permanent address to which landing pages (which summarize metadata associated with this project) and other relevant annotations and functions can optionally be attached. Please see the technical documentation for a full discussion of how this information is to be used. |
| creation_time | An ISO 8601 -; RFC 3339 (subset)-compliant timestamp documenting this project's creation time | Optional | (string) YYYY-MM-DDTHH:MM:SS±NN:NN | Examples: 2021-01-08T00:00:00-00:00 ("Jan 8, 2021") 2021-00-00T00:00:00-00:00 ("2021") 2021-01-08T00:45:40-04:00 ("Jan 8, 2021, 12:45:40AM, Zulu minus 4") Please see the technical documentation for a complete treatment. |
| abbreviation | A very short display label for this project | Optional | string | Should not exceed 10 characters; can only contain 0-9, a-z, A-Z and underscore ("_") |
| name | A short, human-readable, machine-read-friendly label for this project | Required | string | Must be unique to each project. |
| description | A human-readable description of this project | Optional | string |
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Tutorials
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C2M2 Table Guide
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Table Summary
- analysis_type.tsv
- anatomy.tsv
- assay_type.tsv
- biofluid.tsv
- biosample.tsv
- biosample_disease.tsv
- biosample_from_subject.tsv
- biosample_gene.tsv
- biosample_in_collection.tsv
- biosample_protein.tsv
- biosample_ptm.tsv
- biosample_substance.tsv
- collection.tsv
- collection_anatomy.tsv
- collection_biofluid.tsv
- collection_compound.tsv
- collection_defined_by_project.tsv
- collection_disease.tsv
- collection_gene.tsv
- collection_in_collection.tsv
- collection_phenotype.tsv
- collection_protein.tsv
- collection_ptm.tsv
- collection_substance.tsv
- collection_taxonomy.tsv
- compound.tsv
- data_type.tsv
- dcc.tsv (formerly
primary_dcc_contact.tsv - disease.tsv
- domain_location.tsv
- file.tsv
- file_describes_biosample.tsv
- file_describes_collection.tsv
- file_describes_subject.tsv
- file_format.tsv
- file_in_collection.tsv
- gene.tsv
- id_namespace.tsv
- ncbi_taxonomy.tsv
- phenotype.tsv
- phenotype_disease.tsv
- phenotype_gene.tsv
- project.tsv
- project_in_project.tsv
- protein.tsv
- protein_gene.tsv
- ptm.tsv
- ptm_type.tsv
- ptm_subtype.tsv
- sample_prep_method.tsv
- subject.tsv
- subject_disease.tsv
- subject_in_collection.tsv
- subject_phenotype.tsv
- subject_race.tsv
- subject_role_taxonomy.tsv
- subject_substance.tsv
- substance.tsv
- Reference Tables
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Table Summary