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README update
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README.md

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@@ -135,21 +135,21 @@ for i in `ls -d ${INPUT_DIR}/*`; do
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swarm -f defacing_parallel_session_level.swarm --merge-output --logdir ${OUTPUT_DIR}/swarm_log
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```
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### Visually inspect defaced scans using VisualQC
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### Visual Inspection
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To visually inspect quality of defacing with visualqc, we'll need to:
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To visually inspect quality of defacing with [VisualQC](https://raamana.github.io/visualqc/readme.html), we'll need to:
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1. Generate 3D renders for every defaced image in the output directory.
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```bash
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python src/generate_renders.py -o <path/to/desired/defacing/output/directory>
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python src/generate_renders.py -o ${OUTPUT_DIR}
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```
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2. Open TurboVNC through an spersist session. More info [here](https://hpc.nih.gov/docs/nimh.html).
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3. Run the `vqcdeface` command from a command-line terminal within a TurboVNC instance
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```bash
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sh <path/to/defacing/output/directory>/QC_prep/defacing_qc_cmd
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sh ${OUTPUT_DIR}/QC_prep/defacing_qc_cmd
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```
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## Terminology

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