Merge branch 'rel/0.5.0rc0'

Author: oesteban

.mailmap

@@ -8,7 +8,11 @@ Garikoitz Lerma-Usabiaga <[email protected]> garikoitz <[email protected]>
 James D. Kent <[email protected]>
 James D. Kent <[email protected]> <[email protected]>
 James D. Kent <[email protected]> Fred Mertz <[email protected]>
+Michael Joseph <[email protected]>
 Michael Joseph <[email protected]> mjoseph <[email protected]>
 Oscar Esteban <[email protected]>
 Oscar Esteban <[email protected]> <[email protected]>
 Oscar Esteban <[email protected]> oesteban <[email protected]>
+Salim Mansour <[email protected]>
+Salim Mansour <[email protected]> slimnsour <[email protected]>
+Salim Mansour <[email protected]> <[email protected]>

.zenodo.json

@@ -29,6 +29,11 @@
       "name": "Joseph, Michael",
       "orcid": "0000-0002-0068-230X"
     },
+    {
+      "affiliation": "The Centre for Addiction and Mental Health",
+      "name": "Mansour, Salim",
+      "orcid": "0000-0002-1092-1650"
+    },
     {
       "affiliation": "Department of Psychology, University of Texas at Austin, TX, USA",
       "name": "Pisner, Derek",
@@ -40,7 +45,7 @@
       "orcid": "0000-0001-9276-9084"
     },
     {
-      "affiliation": "Department of Psychology, Stanford University, CA, USA",
+      "affiliation": "Basque Center on Cognition, Brain and Language (BCBL)",
       "name": "Lerma-Usabiaga, Garikoitz",
       "orcid": "0000-0001-9800-4816"
     },
@@ -49,13 +54,18 @@
       "name": "Keshavan, Anisha",
       "orcid": "0000-0003-3554-043X"
     },
+    {
+      "affiliation": "Krembil Centre for Neuroinformatics, The Centre for Addiction and Mental Health, Dept. of Psychiatry, University of Toronto",
+      "name": "Dickie, Erin W.",
+      "orcid": "0000-0003-3028-9864"
+    },
     {
       "affiliation": "The University of Washington eScience Institute",
       "name": "Rokem, Ariel",
       "orcid": "0000-0003-0679-1985"
     },
     {
-      "affiliation": "Dep. of Radiology, Lausanne University Hospital and University of Lausanne",
+      "affiliation": "Dept. of Radiology, Lausanne University Hospital and University of Lausanne",
       "name": "Esteban, Oscar",
       "orcid": "0000-0001-8435-6191"
     }
@@ -73,6 +83,12 @@
       "orcid": "0000-0002-1931-4734",
       "type": "Researcher"
     },
+    {
+      "affiliation": "School of Medicine, New York University",
+      "name": "Veraart, Jelle",
+      "orcid": "0000-0003-0781-0420",
+      "type": "Researcher"
+    },
     {
       "affiliation": "Department of Psychology, Stanford University",
       "name": "Poldrack, Russell A.",

CHANGES.rst

@@ -1,3 +1,46 @@
+0.5.0 (TBD)
+===========
+A new minor release going forward with some of the items of our roadmap.
+The most salient features are the integration of FSL Eddy and the adoption of the new *SDCFlows 2.0*
+API.
+
+.. admonition:: Author list for papers based on *dMRIPrep* 0.5.x series
+
+    As described in the `Contributor Guidelines
+    <https://www.nipreps.org/community/CONTRIBUTING/#recognizing-contributions>`__,
+    anyone listed as developer or contributor may write and submit manuscripts
+    about *dMRIPrep*.
+    To do so, please move the author(s) name(s) to the front of the following list:
+
+    Joseph, Michael \ :sup:`1`\ ; Mansour, Salim \ :sup:`1`\ ; Pisner, Derek \ :sup:`2`\ ; Richie-Halford, Adam \ :sup:`3`\ ; Lerma-Usabiaga, Garikoitz \ :sup:`4, 5`\ ; Keshavan, Anisha \ :sup:`3`\ ; Kent, James D. \ :sup:`6`\ ; Dickie, Erin W. \ :sup:`7`\ ; Cieslak, Matthew \ :sup:`8`\ ; Poldrack, Russell A. \ :sup:`5`\ ; Veraart, Jelle \ :sup:`9`\ ; Rokem, Ariel \ :sup:`10`\ ; Esteban, Oscar \ :sup:`11`\ .
+
+    Affiliations:
+
+      1. The Centre for Addiction and Mental Health
+      2. Department of Psychology, University of Texas at Austin, TX, USA
+      3. The University of Washington, eScience Institute
+      4. Basque Center on Cognition, Brain and Language (BCBL)
+      5. Department of Psychology, Stanford University
+      6. Neuroscience Program, University of Iowa
+      7. Krembil Centre for Neuroinformatics, The Centre for Addiction and Mental Health, Dept. of Psychiatry, University of Toronto
+      8. Perelman School of Medicine, University of Pennsylvania, PA, USA
+      9. School of Medicine, New York University
+      10. The University of Washington eScience Institute
+      11. Dept. of Radiology, Lausanne University Hospital and University of Lausanne
+
+  * FIX: Change in _svgutils_ API (0.3.2) breaks our reportlet generation (#151)
+  * FIX: Correctly check *SDCFlows*' registry of ``IntendedFor`` files (#141)
+  * FIX: Honor ``--nprocs`` flag (#142)
+  * ENH: Temporary integration of FSL Eddy (#144)
+  * ENH: Connect fieldmap estimation to preprocessing pipeline of individual DWI runs (#140)
+  * ENH: Refactor workflow for simplicity - explicit iteration over DWIs (#138)
+  * ENH: Run fieldmap estimation using *SDCFlows* 2.0 (#137)
+  * FIX/MAINT: Drop Python 3.6 + Revise Python environment (versions pinned) in Dockerfile (#146)
+  * MAINT: Update *SDCFlows* pinning to the latest 2.0.0 release (#152)
+  * DOC: Revise *dMRIPrep*'s road-map (#147)
+  * DOC: Add FSL ``topup`` reference in citation boilerplate (#148)
+  * DOC: change "functional" to "diffusion" (#143)
+
 0.4.0 (December 10, 2020)
 =========================
 A minor release including T1w-DWI registration with FreeSurfer's ``bbregister``.
@@ -78,7 +121,6 @@ A release to show the deployment process on the Sprint.
 * ENH: Set up customized report specification (#34)
 * MAINT: Use a local docker registry instead of load/save (#46)
 
-
 0.2.1 (December 12, 2019)
 =========================
 A bugfix release to test that versioned documentation is working.
@@ -112,4 +154,5 @@ dMRIPrep will bring the contents of this branch back in as a plugin.
 
 0.1.0 (November 21, 2018)
 =========================
-* First release on GitHub.
+First release on GitHub.
+