Apply suggestions from @josephmje code review

Co-authored-by: Michael Joseph <[email protected]>

Author: 2 people

dmriprep/workflows/dwi/eddy.py

@@ -104,7 +104,7 @@ def init_eddy_wf(debug=False, name="eddy_wf"):
 included in FSL {Eddy().version} [@eddy].
 """
     eddy = pe.Node(
-        Eddy(repol=True, cnr_maps=True, residuals=True, method="jac"),
+        Eddy(),
         name="eddy",
     )
 
@@ -133,6 +133,10 @@ def init_eddy_wf(debug=False, name="eddy_wf"):
             ("dwi_file", "in_file"),
             ("metadata", "in_meta")
         ]),
+        (gen_eddy_files, eddy, [
+            ("out_acqparams", "in_acqp"),
+            ("out_index", "in_index"),
+        ]),
         (eddy, outputnode, [
             ("out_corrected", "out_eddy"),
             ("out_rotated_bvecs", "out_rotated_bvecs")