fix typos and start of travis tests

Author: josephmje

.dockerignore

@@ -8,8 +8,8 @@ build/**/*
 build
 dist/**/*
 dist
-fmriprep.egg-info/**/*
-fmriprep.egg-info
+dmriprep.egg-info/**/*
+dmriprep.egg-info
 .eggs/**/*
 .eggs
 
@@ -39,4 +39,4 @@ out/
 .zenodo.json
 .travis.yml
 .readthedocs.yml
-CONTRIBUTING.md
+CONTRIBUTING.rst

.github/config.yml

@@ -5,8 +5,8 @@ newPRWelcomeComment: >
   Thanks for opening this pull request!
   We have detected this is the first time for you to contribute
   to *dMRIPrep*.
-  Please check out our [contributing guidelines](https://github.com/nipreps/dmriprep/blob/master/CONTRIBUTING.md).
-  
+  Please check out our [contributing guidelines](https://github.com/nipreps/dmriprep/blob/master/CONTRIBUTING.rst).
+
   We invite you to list yourself as a *dMRIPrep* contributor, so if your name
   is not already mentioned, please modify the
   [``.zenodo.json``](https://github.com/nipreps/dmriprep/blob/master/.zenodo.json)
@@ -25,4 +25,4 @@ newPRWelcomeComment: >
   Of course, if you want to opt-out this time there is no
   problem at all with adding your name later.
   You will be always welcome to add it in the future whenever
-  you feel it should be listed.
+  you feel it should be listed.

.travis.yml

@@ -0,0 +1,29 @@
+dist: xenial
+sudo: true
+
+language: python
+python:
+  - 3.5
+  - 3.6
+  - 3.7
+
+# Command to install dependencies, e.g. pip install -r requirements.txt --use-mirrors
+install: pip install -U tox-travis
+
+# Command to run tests, e.g. python setup.py test
+script: tox
+
+# Assuming you have installed the travis-ci CLI tool, after you
+# create the Github repo and add it to Travis, run the
+# following command to finish PyPI deployment setup:
+# $ travis encrypt --add deploy.password
+deploy:
+  provider: pypi
+  distributions: sdist bdist_wheel
+  user: nipy
+  password:
+    secure: PLEASE_REPLACE_ME
+  on:
+    tags: true
+    repo: nipreps/dmriprep
+    python: 3.7

Dockerfile

@@ -163,7 +163,7 @@ RUN pip install --no-cache-dir "$( grep templateflow fmriprep-setup.cfg | xargs
     find $HOME/.cache/templateflow -type d -exec chmod go=u {} + && \
     find $HOME/.cache/templateflow -type f -exec chmod go=u {} +
 
-# Installing FMRIPREP
+# Installing DMRIPREP
 COPY . /src/dmriprep
 ARG VERSION
 # Force static versioning within container

README.rst

@@ -4,7 +4,7 @@ dmriprep
 
 .. image:: https://badgen.net/badge/chat/on%20mattermost/blue
    :target: https://mattermost.brainhack.org/brainhack/channels/dmriprep
-   
+
 .. image:: https://img.shields.io/pypi/v/dmriprep.svg
         :target: https://pypi.python.org/pypi/dmriprep
 
@@ -49,4 +49,4 @@ segmentation, skullstripping etc.) providing outputs that can be
 easily submitted to a variety of tractography algorithms.
 
 [Documentation `dmriprep.org <https://dmriprep.readthedocs.io>`_]
-[Support `neurostars.org <https://neurostars.org/tags/fmriprep>`_]
+[Support `neurostars.org <https://neurostars.org/tags/dmriprep>`_]

dmriprep/__init__.py

@@ -15,7 +15,7 @@
     '__packagename__',
 ]
 
-# cmp is not used by fmriprep, so ignore nipype-generated warnings
+# cmp is not used by dmriprep, so ignore nipype-generated warnings
 _warnings.filterwarnings('ignore', r'cmp not installed')
 _warnings.filterwarnings('ignore', r'This has not been fully tested. Please report any failures.')
 _warnings.filterwarnings('ignore', r"can't resolve package from __spec__ or __package__")

dmriprep/utils/bids.py

@@ -60,10 +60,10 @@ def write_derivative_description(bids_dir, deriv_dir):
     }
 
     # Keys that can only be set by environment
-    if 'FMRIPREP_DOCKER_TAG' in os.environ:
-        desc['DockerHubContainerTag'] = os.environ['FMRIPREP_DOCKER_TAG']
-    if 'FMRIPREP_SINGULARITY_URL' in os.environ:
-        singularity_url = os.environ['FMRIPREP_SINGULARITY_URL']
+    if 'DMRIPREP_DOCKER_TAG' in os.environ:
+        desc['DockerHubContainerTag'] = os.environ['DMRIPREP_DOCKER_TAG']
+    if 'DMRIPREP_SINGULARITY_URL' in os.environ:
+        singularity_url = os.environ['DMRIPREP_SINGULARITY_URL']
         desc['SingularityContainerURL'] = singularity_url
 
         singularity_md5 = _get_shub_version(singularity_url)
@@ -88,7 +88,7 @@ def write_derivative_description(bids_dir, deriv_dir):
 
 
 def validate_input_dir(exec_env, bids_dir, participant_label):
-    # Ignore issues and warnings that should not influence FMRIPREP
+    # Ignore issues and warnings that should not influence dMRIPrep
     import tempfile
     import subprocess
     validator_config_dict = {