add probot apps and update docs

Author: josephmje

.github/config.yml

@@ -0,0 +1,29 @@
+# Configuration for new-pr-welcome - https://github.com/behaviorbot/new-pr-welcome
+
+# Comment to be posted to on PRs from first time contributors in your repository
+newPRWelcomeComment: >
+  Thanks for opening this pull request!
+  We have detected this is the first time for you to contribute
+  to *dMRIPrep*.
+  Please check out our [contributing guidelines](https://github.com/nipy/dmriprep/blob/master/CONTRIBUTING.rst).
+
+  We invite you to list yourself as a *dMRIPrep* contributor, so if your name
+  is not already mentioned, please modify the
+  [``.zenodo.json``](https://github.com/nipy/dmriprep/blob/master/.zenodo.json)
+  file with your data right above Anisha's entry. Example:
+  ```
+  {
+     "name": "Contributor, New dMRIPrep",
+     "affiliation": "Department of dMRI prep'ing, Open Science Made-Up University",
+     "orcid": "<your id>"
+  },
+  {
+      "name": "Keshavan, Anisha",
+      "affiliation": "Child Mind Institute",
+      "orcid": "0000-0003-3554-043X"
+  },
+  ```
+  Of course, if you want to opt-out this time there is no
+  problem at all with adding your name later.
+  You will be always welcome to add it in the future whenever
+  you feel it should be listed.

.github/release-drafter.yml

@@ -0,0 +1,5 @@
+template: |
+  ## Release Notes
+
+  ## CHANGES
+  $CHANGES

.github/stale.yml

@@ -0,0 +1,20 @@
+# Number of days of inactivity before an issue becomes stale
+daysUntilStale: 900
+# Number of days of inactivity before a stale issue is closed
+daysUntilClose: 200
+# Issues with these labels will never be considered stale
+exemptLabels:
+  - pinned
+  - security
+  - feature
+  - help wanted
+  - low priority
+# Label to use when marking an issue as stale
+staleLabel: stale
+# Comment to post when marking an issue as stale. Set to `false` to disable
+markComment: >
+  This issue has been automatically marked as stale because it has not had
+  recent activity. It will be closed if no further activity occurs. Thank you
+  for your contributions.
+# Comment to post when closing a stale issue. Set to `false` to disable
+closeComment: false

.travis.yml

@@ -26,7 +26,7 @@ script: tox
 deploy:
   provider: pypi
   distributions: sdist bdist_wheel
-  user: josephmje
+  user: nipy
   password:
     secure: PLEASE_REPLACE_ME
   on:

CONTRIBUTING.rst

@@ -123,7 +123,7 @@ You can contribute in many ways:
 Report Bugs
 ~~~~~~~~~~~
 
-Report bugs at https://github.com/josephmje/dmriprep/issues.
+Report bugs at https://github.com/nipy/dmriprep/issues.
 
 If you are reporting a bug, please include:
 
@@ -153,7 +153,7 @@ articles, and such.
 Submit Feedback
 ~~~~~~~~~~~~~~~
 
-The best way to send feedback is to file an issue at https://github.com/josephmje/dmriprep/issues.
+The best way to send feedback is to file an issue at https://github.com/nipy/dmriprep/issues.
 
 If you are proposing a feature:
 

README.rst

@@ -10,7 +10,7 @@ dmriprep
         :target: https://travis-ci.org/akeshavan/dmriprep
 
 .. image:: https://api.codacy.com/project/badge/Grade/01a2d18ee62846e3817c6dccd7f8f5f1
-    :target: https://www.codacy.com/app/josephmje/dmriprep?utm_source=github.com&utm_medium=referral&utm_content=josephmje/dmriprep&utm_campaign=Badge_Grade
+    :target: https://www.codacy.com/app/nipy/dmriprep?utm_source=github.com&utm_medium=referral&utm_content=nipy/dmriprep&utm_campaign=Badge_Grade
     :alt: Codacy Badge
 
 .. image:: https://readthedocs.org/projects/dmriprep/badge/?version=latest

dmriprep/__about__.py

@@ -8,10 +8,10 @@
 __packagename__ = 'dmriprep'
 __credits__ = ('Contributors: please check the ``.zenodo.json`` file at the'
                'top-level folder of the repository')
-__url__ = 'https://github.com/josephmje/dmriprep'
+__url__ = 'https://github.com/nipy/dmriprep'
 
 DOWNLOAD_URL = (
-    'https://github.com/josephmje/dmriprep/{name}/archive/{ver}.tar.gz'.format(
+    'https://github.com/nipy/dmriprep/{name}/archive/{ver}.tar.gz'.format(
         name=__packagename__, ver=__version__
     )
 )

docs/installation.rst

@@ -9,7 +9,7 @@ Docker Container
 
 .. code-block:: console
 
-    $ git clone https://github.com/josephmje/dmriprep
+    $ git clone https://github.com/nipy/dmriprep
     $ cd dmriprep
     $ make docker
 
@@ -67,13 +67,13 @@ You can either clone the public repository:
 
 .. code-block:: console
 
-    $ git clone git://github.com/josephmje/dmriprep
+    $ git clone git://github.com/nipy/dmriprep
 
 Or download the `tarball`_:
 
 .. code-block:: console
 
-    $ curl  -OL https://github.com/josephmje/dmriprep/tarball/master
+    $ curl  -OL https://github.com/nipy/dmriprep/tarball/master
 
 Once you have a copy of the source, you can install it with:
 
@@ -82,8 +82,8 @@ Once you have a copy of the source, you can install it with:
     $ python setup.py install
 
 
-.. _Github repo: https://github.com/josephmje/dmriprep
-.. _tarball: https://github.com/josephmje/dmriprep/tarball/master
+.. _Github repo: https://github.com/nipy/dmriprep
+.. _tarball: https://github.com/nipy/dmriprep/tarball/master
 
 External Dependencies
 ---------------------

docs/license.rst

@@ -2,7 +2,7 @@ License information
 -------------------
 
 We use the 3-clause BSD license; the full license may be found in the
-`LICENSE <https://github.com/josephmje/dmriprep/blob/master/LICENSE>`_ file
+`LICENSE <https://github.com/nipy/dmriprep/blob/master/LICENSE>`_ file
 in the ``dmriprep`` distribution.
 
 All trademarks referenced herein are property of their respective holders.

setup.cfg

@@ -1,9 +1,9 @@
 [metadata]
-url = https://github.com/josephmje/dmriprep
-author = TIGR Lab
-author_email = [email protected]
-maintainer = Michael Joseph
-maintainer_email = [email protected]
+url = https://github.com/nipy/dmriprep
+author = The Nipy developers
+author_email = [email protected]
+maintainer = Oscar Esteban
+maintainer_email = [email protected]
 description = dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data.
 long_description = file:long_description.rst
 long_description_content_type = text/x-rst; charset=UTF-8