add zenodo

Author: josephmje

.zenodo.json

@@ -0,0 +1,34 @@
+{
+    "title": "dMRIPrep: a robust preprocessing pipeline for diffusion MRI",
+    "description": "<p>dMRIPrep is a robust and easy-to-use pipeline for preprocessing of dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.</p>",
+    "creators": [
+    {
+    "name": "Richie-Halford, Adam",
+    "affiliation": "University of Washington",
+    "orcid": "0000-0001-9276-9084"
+    },
+    {
+    "name": "Rokem, Ariel",
+    "affiliation": "The University of Washington eScience Institute",
+    "orcid": "0000-0003-0679-1985"
+    },
+    {
+    "name": "Yeatman, Jason",
+    "affiliation": "Stanford University",
+    "orcid": "0000-0002-2686-1293"
+    },
+    {
+    "name": "Joseph, Michael",
+    "affiliation": "The Centre for Addiction and Mental Health",
+    "orcid": "0000-0002-0068-230X"
+    },
+    {
+    "name": "Mansour, Salim",
+    "affiliation": "The Centre for Addiction and Mental Health"
+    },
+    {
+    "name": "Keshavan, Anisha",
+    "affiliation": "Child Mind Institute",
+    "orcid": "0000-0003-3554-043X"
+    }
+]

dmriprep/__about__.py

@@ -0,0 +1,17 @@
+"""
+Base module variables
+"""
+from ._version import get_versions
+__version__ = get_versions()['version']
+del get_versions
+
+__packagename__ = "dmriprep"
+__credits__ = ("Contributors: please check the ``.zenodo.json`` file at the"
+               "top-level folder of the repository")
+__url__ = "https://github.com/nipy/dmriprep"
+
+DOWNLOAD_URL = (
+    "https://github.com/nipy/dmriprep/{name}/archive/{ver}.tar.gz".format(
+        name=__packagename__, ver=__version__
+    )
+)

dmriprep/__init__.py

@@ -1,58 +1,17 @@
+#!/usr/bin/env python
 # -*- coding: utf-8 -*-
 
 """Top-level package for dmriprep."""
 
-__author__ = """Anisha Keshavan"""
-__email__ = "[email protected]"
-__version__ = "0.1.0"
+from .__about__ import (
+    __version__,
+    __credits__,
+    __packagename__
+)
 
-import errno
-import logging
-import os
 import warnings
 
 # Filter warnings that are visible whenever you import another package that
 # was compiled against an older numpy than is installed.
 warnings.filterwarnings("ignore", message="numpy.dtype size changed")
 warnings.filterwarnings("ignore", message="numpy.ufunc size changed")
-
-from . import qc
-
-module_logger = logging.getLogger(__name__)
-
-# get the log level from environment variable
-if "DMIRPREP_LOGLEVEL" in os.environ:
-    loglevel = os.environ["DMRIPREP_LOGLEVEL"]
-    module_logger.setLevel(getattr(logging, loglevel.upper()))
-else:
-    module_logger.setLevel(logging.WARNING)
-
-# create a file handler
-logpath = os.path.join(os.path.expanduser("~"), ".dmriprep", "dmriprep.log")
-
-# Create the config directory if it doesn't exist
-logdir = os.path.dirname(logpath)
-try:
-    os.makedirs(logdir)
-except OSError as e:
-    pre_existing = e.errno == errno.EEXIST and os.path.isdir(logdir)
-    if pre_existing:
-        pass
-    else:
-        raise e
-
-handler = logging.FileHandler(logpath, mode="w")
-handler.setLevel(logging.DEBUG)
-
-# create a logging format
-formatter = logging.Formatter("%(asctime)s - %(name)s - %(levelname)s - %(message)s")
-handler.setFormatter(formatter)
-
-# add the handlers to the logger
-module_logger.addHandler(handler)
-module_logger.info("Started new dmriprep session")
-
-from ._version import get_versions
-
-__version__ = get_versions()["version"]
-del get_versions