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| 1 | +Preprocessing of diffusion MRI (dMRI) involves numerous steps to clean and standardize |
| 2 | +the data before fitting a particular model. |
| 3 | +Generally, researchers create ad hoc preprocessing workflows for each dataset, |
| 4 | +building upon a large inventory of available tools. |
| 5 | +The complexity of these workflows has snowballed with rapid advances in |
| 6 | +acquisition and processing. |
| 7 | +dMRIPrep is an analysis-agnostic tool that addresses the challenge of robust and |
| 8 | +reproducible preprocessing for whole-brain dMRI data. |
| 9 | +dMRIPrep automatically adapts a best-in-breed workflow to the idiosyncrasies of |
| 10 | +virtually any dataset, ensuring high-quality preprocessing without manual intervention. |
| 11 | +dMRIPrep equips neuroscientists with an easy-to-use and transparent preprocessing |
| 12 | +workflow, which can help ensure the validity of inference and the interpretability |
| 13 | +of results. |
| 14 | + |
| 15 | +The workflow is based on `Nipype <https://nipype.readthedocs.io>`_ and encompases a large |
| 16 | +set of tools from well-known neuroimaging packages, including |
| 17 | +`FSL <https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>`_, |
| 18 | +`ANTs <https://stnava.github.io/ANTs/>`_, |
| 19 | +`FreeSurfer <https://surfer.nmr.mgh.harvard.edu/>`_, |
| 20 | +`AFNI <https://afni.nimh.nih.gov/>`_, |
| 21 | +and `Nilearn <https://nilearn.github.io/>`_. |
| 22 | +This pipeline was designed to provide the best software implementation for each state of |
| 23 | +preprocessing, and will be updated as newer and better neuroimaging software becomes |
| 24 | +available. |
| 25 | + |
| 26 | +dMRIPrep performs basic preprocessing steps (coregistration, normalization, unwarping, |
| 27 | +segmentation, skullstripping etc.) providing outputs that can be |
| 28 | +easily submitted to a variety of tractography algorithms. |
| 29 | + |
| 30 | +[Documentation `dmriprep.org <https://dmriprep.readthedocs.io>`_] |
| 31 | +[Support `neurostars.org <https://neurostars.org/tags/fmriprep>`_] |
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