docs: fmriprep is necessary to build docs

Author: oesteban

dmriprep/workflows/base.py

@@ -367,34 +367,24 @@ def init_single_subject_wf(subject_id):
             use_bbr=True,
         )
 
-        workflow.connect(
-            [
-                # T1w Mask
-                (
-                    anat_preproc_wf,
-                    t1w_brain,
-                    [
-                        ("outputnode.t1w_preproc", "in_file"),
-                        ("outputnode.t1w_mask", "in_mask"),
-                    ],
-                ),
-                # BBRegister
-                (split_info, bbr_wf, [("dwi_file", "inputnode.in_file")]),
-                (t1w_brain, bbr_wf, [("out_file", "inputnode.t1w_brain")]),
-                (
-                    anat_preproc_wf,
-                    bbr_wf,
-                    [("outputnode.t1w_dseg", "inputnode.t1w_dseg")],
-                ),
-                (fsinputnode, bbr_wf, [("subjects_dir", "inputnode.subjects_dir")]),
-                (bids_info, bbr_wf, [("subject", "inputnode.subject_id")]),
-                (
-                    anat_preproc_wf,
-                    bbr_wf,
-                    [("outputnode.fsnative2t1w_xfm", "inputnode.fsnative2t1w_xfm")],
-                ),
-            ]
-        )
+        # fmt:off
+        workflow.connect([
+            # T1w Mask
+            (anat_preproc_wf, t1w_brain, [
+                ("outputnode.t1w_preproc", "in_file"),
+                ("outputnode.t1w_mask", "in_mask"),
+            ]),
+            # BBRegister
+            (split_info, bbr_wf, [("dwi_file", "inputnode.in_file")]),
+            (t1w_brain, bbr_wf, [("out_file", "inputnode.t1w_brain")]),
+            (anat_preproc_wf, bbr_wf, [("outputnode.t1w_dseg", "inputnode.t1w_dseg")]),
+            (fsinputnode, bbr_wf, [("subjects_dir", "inputnode.subjects_dir")]),
+            (bids_info, bbr_wf, [("subject", "inputnode.subject_id")]),
+            (anat_preproc_wf, bbr_wf, [
+                ("outputnode.fsnative2t1w_xfm", "inputnode.fsnative2t1w_xfm")
+            ]),
+        ])
+        # fmt:on
 
     fmap_estimation_wf = init_fmap_estimation_wf(
         subject_data["dwi"], debug=config.execution.debug

docs/requirements.txt

@@ -1,5 +1,6 @@
 git+https://github.com/AleksandarPetrov/napoleon.git@0dc3f28a309ad602be5f44a9049785a1026451b3#egg=sphinxcontrib-napoleon
 git+https://github.com/rwblair/sphinxcontrib-versioning.git@39b40b0b84bf872fc398feff05344051bbce0f63#egg=sphinxcontrib-versioning
+fmriprep
 nbsphinx
 nipype ~= 1.4
 git+https://github.com/nipreps/niworkflows.git@master#egg=niworkflows