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Merge pull request #135 from nipreps/maint/migrate-travis-to-gha
MAINT: Move packaging tests from TravisCI to GitHub Actions
2 parents 087188c + 3a0edb3 commit 7a2ad1d

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4 files changed

+108
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‎.circleci/config.yml

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@@ -505,7 +505,7 @@ jobs:
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python -m venv /tmp/sdist
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source /tmp/sdist/bin/activate
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python -m pip install -U pip
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python -m pip install "setuptools>=30.3.0" twine
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python -m pip install "setuptools>=40.8.0" twine
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- run:
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name: Build dMRIPrep
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command: |
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python -m venv /tmp/wheel
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source /tmp/wheel/bin/activate
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python -m pip install -U pip
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python -m pip install "setuptools>=30.3.0" twine
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python -m pip install "setuptools>=40.8.0" twine
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THISVERSION=$( python get_version.py )
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THISVERSION=${THISVERSION%.dirty*}
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THISVERSION=${CIRCLE_TAG:-$THISVERSION}
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python -m venv /tmp/sdist
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source /tmp/sdist/bin/activate
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python -m pip install -U pip
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python -m pip install "setuptools>=30.3.0" twine
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python -m pip install "setuptools>=40.8.0" wheel twine
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- run:
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name: Build dMRIPrep
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command: |

‎.github/workflows/pythonpackage.yml

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name: Python package
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on:
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push:
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branches: [ '*' ]
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tags: [ '*' ]
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pull_request:
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branches: [ master, 'maint/*' ]
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jobs:
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build:
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if: "!contains(github.event.head_commit.message, '[skip ci]')"
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: [3.7, 3.8]
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pip: ["pip~=18.1", "pip>=20.3"]
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setuptools: ["setuptools==40.8.0", "setuptools"]
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steps:
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v1
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with:
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python-version: ${{ matrix.python-version }}
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- uses: actions/checkout@v2
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with:
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ssh-key: "${{ secrets.NIPREPS_DEPLOY }}"
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- name: Fetch all tags (for versioneer to work)
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if: "!startsWith(github.ref, 'refs/tags/')"
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run: |
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/usr/bin/git -c protocol.version=2 fetch --tags --prune --unshallow origin
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- name: Build in confined, updated environment and interpolate version
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run: |
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python -m venv /tmp/buildenv
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source /tmp/buildenv/bin/activate
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python -m pip install -U setuptools pip wheel twine docutils
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python setup.py sdist bdist_wheel
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python -m twine check dist/dmriprep*
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# Interpolate version
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if [[ "$GITHUB_REF" == refs/tags/* ]]; then
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TAG=${GITHUB_REF##*/}
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fi
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THISVERSION=$( python get_version.py )
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THISVERSION=${TAG:-$THISVERSION}
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echo "Expected VERSION: \"${THISVERSION}\""
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echo "THISVERSION=${THISVERSION}" >> ${GITHUB_ENV}
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- name: Install in confined environment [sdist]
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run: |
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python -m venv /tmp/install_sdist
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source /tmp/install_sdist/bin/activate
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python -m pip install "${{ matrix.pip }}" "${{ matrix.setuptools }}"
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python -m pip install dist/dmriprep*.tar.gz
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INSTALLED_VERSION=$(python -c 'import dmriprep; print(dmriprep.__version__, end="")')
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echo "VERSION: \"${THISVERSION}\""
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echo "INSTALLED: \"${INSTALLED_VERSION}\""
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test "${INSTALLED_VERSION}" = "${THISVERSION}"
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- name: Install in confined environment [wheel]
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run: |
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python -m venv /tmp/install_wheel
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source /tmp/install_wheel/bin/activate
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python -m pip install "${{ matrix.pip }}" "${{ matrix.setuptools }}"
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python -m pip install dist/dmriprep*.whl
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INSTALLED_VERSION=$(python -c 'import dmriprep; print(dmriprep.__version__, end="")')
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echo "INSTALLED: \"${INSTALLED_VERSION}\""
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test "${INSTALLED_VERSION}" = "${THISVERSION}"
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- name: Install in confined environment [setup.py - install]
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run: |
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python -m venv /tmp/setup_install
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source /tmp/setup_install/bin/activate
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python -m pip install "${{ matrix.pip }}" "${{ matrix.setuptools }}"
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python -m pip install numpy scipy "Cython >= 0.28.5" # sklearn needs this
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python -m pip install scikit-learn # otherwise it attempts to build it
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python setup.py install
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INSTALLED_VERSION=$(python -c 'import dmriprep; print(dmriprep.__version__, end="")')
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echo "INSTALLED: \"${INSTALLED_VERSION}\""
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test "${INSTALLED_VERSION}" = "${THISVERSION}"
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- name: Install in confined environment [setup.py - develop]
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run: |
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python -m venv /tmp/setup_develop
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source /tmp/setup_develop/bin/activate
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python -m pip install "${{ matrix.pip }}" "${{ matrix.setuptools }}"
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# sklearn needs these dependencies
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if [ "${{ matrix.python-version }}" == "3.6" ]; then
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python -m pip install "numpy < 1.20" scipy "Cython >= 0.28.5" # numpy 1.20 drops Py3.6
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else
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python -m pip install numpy scipy "Cython >= 0.28.5"
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fi
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python -m pip install scikit-learn # otherwise it attempts to build it
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python setup.py develop
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INSTALLED_VERSION=$(python -c 'import dmriprep; print(dmriprep.__version__, end="")')
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echo "INSTALLED: \"${INSTALLED_VERSION}\""
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test "${INSTALLED_VERSION}" = "${THISVERSION}"
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flake8:
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if: "!contains(github.event.head_commit.message, '[skip ci]')"
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python 3.7
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uses: actions/setup-python@v1
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with:
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python-version: 3.7
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- run: pip install flake8
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- run: flake8 dmriprep

‎.travis.yml

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This file was deleted.

‎setup.cfg

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@@ -29,8 +29,8 @@ install_requires =
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numpy
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pybids >= 0.11.1
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pyyaml
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sdcflows ~= 1.3.3
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smriprep ~= 0.7.0
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sdcflows >= 2.0.0rc2
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smriprep >= 0.8.0rc0
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templateflow ~= 0.6
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toml
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setup_requires =

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