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lines changed Original file line number Diff line number Diff line change @@ -27,13 +27,10 @@ sections:
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overlaid on the participant's T1w template.
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subtitle : Surface reconstruction
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- name : Diffusion
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- ordering : session, acq , run
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+ ordering : session, acquisition , run
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reportlets :
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- bids : {datatype: dwi, desc: summary, suffix: dwi}
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- bids : {datatype: dwi, desc: validation, suffix: dwi}
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- - bids : {datatype: dwi, suffix: 'dwi'}
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- caption : Brain mask calculated on the dwi signal (red contour).
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- subtitle : Brain mask
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- name : About
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reportlets :
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- bids : {datatype: anat, desc: about, suffix: T1w}
Original file line number Diff line number Diff line change @@ -130,16 +130,14 @@ def init_dwi_preproc_wf(
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# For doc building purposes
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if not hasattr (layout , 'parse_file_entities' ):
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LOGGER .log (25 , 'No valid layout: building empty workflow.' )
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- b0_ixs = [0 ]
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metadata = {
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'PhaseEncodingDirection' : 'j' ,
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}
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else :
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metadata = layout .get_metadata (dwi_file )
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inputnode = pe .Node (niu .IdentityInterface (
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- fields = ['dwi_file' , 'b0_ixs' ,
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- 'bvec_file' , 'bval_file' ]),
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+ fields = ['dwi_file' , 'bvec_file' , 'bval_file' ]),
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name = 'inputnode' )
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inputnode .inputs .dwi_file = dwi_file
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inputnode .inputs .bvec_file = layout .get_bvec (dwi_file )
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