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dmriprep/workflows/base.py

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -357,7 +357,7 @@ def init_single_subject_wf(subject_id):
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if config.workflow.run_reconall:
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from niworkflows.interfaces.nibabel import ApplyMask
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# Mask the T1
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# Mask the T1w
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t1w_brain = pe.Node(ApplyMask(), name='t1w_brain')
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bbr_wf = init_bbreg_wf(
@@ -367,10 +367,10 @@ def init_single_subject_wf(subject_id):
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)
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workflow.connect([
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# T1 Mask
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# T1w Mask
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(anat_preproc_wf, t1w_brain, [('outputnode.t1w_preproc', 'in_file'),
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('outputnode.t1w_mask', 'in_mask')]),
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# BBregister
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# BBRegister
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(split_info, bbr_wf, [('dwi_file', 'inputnode.in_file')]),
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(t1w_brain, bbr_wf, [('out_file', 'inputnode.t1w_brain')]),
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(anat_preproc_wf, bbr_wf, [('outputnode.t1w_dseg', 'inputnode.t1w_dseg')]),

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