fix: update anat workflow to new api / fix packaging test

Author: oesteban

.circleci/config.yml

@@ -470,7 +470,7 @@ jobs:
             which dmriprep | grep wheel\\/bin
             INSTALLED_VERSION=$(dmriprep --version)
             INSTALLED_VERSION=${INSTALLED_VERSION%$'\r'}
-            INSTALLED_VERSION=${INSTALLED_VERSION#*"dmriprep v"}
+            INSTALLED_VERSION=${INSTALLED_VERSION#*"dMRIPrep v"}
             echo "VERSION: \"$THISVERSION\""
             echo "INSTALLED: \"$INSTALLED_VERSION\""
             test "$INSTALLED_VERSION" = "$THISVERSION"

dmriprep/workflows/base.py

@@ -201,15 +201,15 @@ def init_single_subject_wf(subject_id):
         freesurfer=config.workflow.run_reconall,
         hires=config.workflow.hires,
         longitudinal=config.workflow.longitudinal,
-        num_t1w=len(subject_data['t1w']),
         omp_nthreads=config.nipype.omp_nthreads,
         output_dir=str(config.execution.output_dir),
         reportlets_dir=reportlets_dir,
         skull_strip_fixed_seed=config.workflow.skull_strip_fixed_seed,
-        # skull_strip_mode='force',
+        skull_strip_mode='force',
         skull_strip_template=Reference.from_string(
             config.workflow.skull_strip_template)[0],
         spaces=spaces,
+        t1w=subject_data['t1w'],
     )
 
     workflow.connect([