FIX: Require recent templateflow, select correct aparc dseg.tsv (#3256)

Author: bpinsard

fmriprep/cli/run.py

@@ -197,7 +197,16 @@ def main():
             from niworkflows.utils.misc import _copy_any
             from templateflow import api
 
-            dseg_tsv = str(api.get('fsaverage', suffix='dseg', extension=['.tsv']))
+            dseg_tsv = str(
+                api.get(
+                    'fsaverage',
+                    hemi=None,
+                    atlas=None,
+                    segmentation='aparc',
+                    suffix='dseg',
+                    extension=['.tsv'],
+                )
+            )
             _copy_any(dseg_tsv, str(config.execution.fmriprep_dir / 'desc-aseg_dseg.tsv'))
             _copy_any(dseg_tsv, str(config.execution.fmriprep_dir / 'desc-aparcaseg_dseg.tsv'))
         errno = 0

pyproject.toml

@@ -35,7 +35,7 @@ dependencies = [
     "sdcflows @ git+https://github.com/nipreps/sdcflows.git@master",
     "smriprep @ git+https://github.com/nipreps/smriprep.git@master",
     "tedana >= 23.0.2",
-    "templateflow >= 23.0.0",
+    "templateflow >= 24.1.0",
     "toml",
     "codecarbon",
     "APScheduler",

requirements.txt

@@ -418,10 +418,8 @@ tedana==23.0.2
     # via
     #   fmriprep
     #   fmriprep (pyproject.toml)
-templateflow==23.1.0
+templateflow==24.2.0
     # via
-    #   fmriprep
-    #   fmriprep (pyproject.toml)
     #   nireports
     #   niworkflows
     #   sdcflows