Apply suggestions from code review

Co-authored-by: Chris Markiewicz <[email protected]>

Author: mgxd

fmriprep/workflows/bold/base.py

@@ -209,7 +209,6 @@ def init_bold_wf(
                 "t1w_mask",
                 "t1w_dseg",
                 "t1w_tpms",
-                "t2w_preproc",  # Optional
                 # FreeSurfer outputs
                 "subjects_dir",
                 "subject_id",
@@ -261,7 +260,6 @@ def init_bold_wf(
             ('t1w_preproc', 'inputnode.t1w_preproc'),
             ('t1w_mask', 'inputnode.t1w_mask'),
             ('t1w_dseg', 'inputnode.t1w_dseg'),
-            ('t2w_preproc', 'inputnode.t2w_preproc'),
             ('subjects_dir', 'inputnode.subjects_dir'),
             ('subject_id', 'inputnode.subject_id'),
             ('fsnative2t1w_xfm', 'inputnode.fsnative2t1w_xfm'),

fmriprep/workflows/bold/fit.py

@@ -268,8 +268,6 @@ def init_bold_fit_wf(
                 "subjects_dir",
                 "subject_id",
                 "fsnative2t1w_xfm",
-                # Optional - improvements if available
-                "t2w_preproc",
             ],
         ),
         name="inputnode",

fmriprep/workflows/tests/test_base.py

@@ -105,7 +105,7 @@ def bids_root(tmp_path_factory):
 
 
 def _make_params(
-    bold2anat_init: str = "t1w",
+    bold2anat_init: str = "auto",
     use_bbr: bool | None = None,
     dummy_scans: int | None = None,
     me_output_echos: bool = False,
@@ -163,6 +163,8 @@ def _make_params(
     ),
     [
         _make_params(),
+        _make_params(bold2anat_init="t1w"),
+        _make_params(bold2anat_init="t2w"),
         _make_params(bold2anat_init="header"),
         _make_params(use_bbr=True),
         _make_params(use_bbr=False),