CI: Install requires; DEP: Require nipreps/niworkflows#358

Author: effigies

.circleci/config.yml

@@ -318,7 +318,9 @@ jobs:
               apt-get install -y graphviz
       - run:
           name: Install fMRIPrep
-          command: python -m pip install ".[doc]"
+          command: |
+              python -m pip install -r requirements.txt
+              python -m pip install ".[doc]"
       - run:
           name: Build documentation
           command: make SPHINXOPTS="-W" -C docs html

docs/environment.yml

@@ -28,6 +28,7 @@ dependencies:
     - svgutils
     - nitime
     - nilearn!=0.5.0,!=0.5.1
-    - niworkflows<0.9.0a0,>=0.8.1
-    - smriprep
     - tedana>=0.0.5
+    - git+https://github.com/effigies/niworkflows.git@e6a277ee5e47be5f8148b136b7201c9beb8e70a3#egg=niworkflows
+    - git+https://github.com/poldracklab/smriprep.git@f1cfc37bcdc346549dbf1d037cdade3a3b32d5de#egg=smriprep
+    - templateflow<0.2.0a0,>=0.1.3

fmriprep/__about__.py

@@ -89,14 +89,14 @@
     'nilearn!=0.5.0,!=0.5.1',
     'nipype>=1.1.6',
     'nitime',
-    'niworkflows',
+    'niworkflows>=0.9',
     'numpy',
     'pandas',
     'psutil>=5.4',
     'pybids<0.8.0a0,>=0.7.1',
     'pyyaml',
     'scikit-image',
-    'smriprep',
+    'smriprep>=0.2.0a',
     'statsmodels',
     'tedana>=0.0.5',
     'templateflow<0.2.0a0,>=0.1.3',
@@ -107,7 +107,7 @@
     'git+https://github.com/poldracklab/niworkflows.git@'
     '076aed98962b10d107c83110c05e42466a89bbc4#egg=niworkflows',
     'git+https://github.com/poldracklab/smriprep.git@'
-    'f1cfc37bcdc346549dbf1d037cdade3a3b32d5de#egg=smriprep-0.1.0',
+    'f1cfc37bcdc346549dbf1d037cdade3a3b32d5de#egg=smriprep',
 ]
 
 TESTS_REQUIRES = [

requirements.txt

@@ -1,4 +1,4 @@
 nilearn!=0.5.0,!=0.5.1
-git+https://github.com/poldracklab/niworkflows.git@076aed98962b10d107c83110c05e42466a89bbc4#egg=niworkflows
-git+https://github.com/poldracklab/smriprep.git@f1cfc37bcdc346549dbf1d037cdade3a3b32d5de#egg=smriprep-0.1.0
+git+https://github.com/effigies/niworkflows.git@5e9daf0b08fcad2b17350a71ecaf71fa9ce4eff7#egg=niworkflows
+git+https://github.com/poldracklab/smriprep.git@f1cfc37bcdc346549dbf1d037cdade3a3b32d5de#egg=smriprep
 templateflow<0.2.0a0,>=0.1.3