Skip to content

Commit 13a2d44

Browse files
committed
Merge tag '25.2.0'
25.2.0 (October 01, 2025) New feature release in the 25.2.x series. This release is an *fMRIPrep Long-Term Support (LTS)* release. The planned support window is 4 years, until October 2029. This release is an incremental improvement over 25.1.x, but includes some fixes and improvements that do not fit within our `bug-fix policy <https://www.nipreps.org/devs/releases/#bug-fix-releases>`__. Importantly, the change in interpolation in 25.1.0 introduced artifacts for some datasets. This release changes the default interpolation mode to ``grid-constant``, which resolves those problems while not reintroducing the issue the previous release sought to fix. This release also (finally) introduces per-session processing. The ``--session-label`` flag selects the sessions to process, and the ``--subject-anatomical-reference`` flag indicates whether and how to combine across sessions. Existing filters passed via ``--bids-filter-file`` may need to be updated or removed in favor of using these flags to achieve the desired behavior. We would like to thank the AMP-SCZ and ENIGMA consortia for testing out and providing feedback on this release. * FIX: Clean up output report language (#3529) * FIX: Default to grid-constant interpolation mode (#3516) * FIX: Adapt to transposed ndcoords in nitransforms (#3517) * FIX: Write out Freesurfer-derived outputs (#3512) * FIX: Add kwargs to _warnings.py (#3483) * ENH: Resample BOLD data to any surface template space using the Connectome Workbench (#3461) * ENH: Add boldref / sbref to source metadata (#3532) * ENH: Add dedicated session filtering, alternative anatomical template options (#3495) * ENH: Write out goodvoxels mask (#3513) * ENH: Add registration metadata to boldref-to-anat transforms (#3500) * ENH: Write out cortex mask GIFTIs (#3491) * ENH: Update transforms.py according to new transform chain of nitransforms (#3494) * RF/DOC: Improve and document command-line parser defaults (#3487) * DOC: Explain better SDC and B0FieldSource requirement (#2768) * DOC: Document `freesurfer` parameter in BOLD confound workflow init (#3504) * DOC: Add myself to contributor list (#3506) * DOC: Fix non-standard Input/Output docstring section management (#3505) * MNT: Split Dockerfile into base and pixi layers (#3521) * MNT: Replace conda with pixi and lock (#3503) * MNT: Update license metadata using SPDX expression (#3486) * MNT: no need to re-run `ruff check` after `ruff format` (#3480) * MNT: Update pre-commit ruff legacy alias (#3479)
2 parents 3457a19 + d28596f commit 13a2d44

15 files changed

+391
-1577
lines changed

.maint/CONTRIBUTORS.md

Lines changed: 13 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -13,42 +13,52 @@ Before every release, unlisted contributors will be invited again to add their n
1313
| Bellec | Pierre | | 0000-0002-9111-0699 | SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada |
1414
| Benson | Noah C. | | 0000-0002-2365-8265 | Department of Psychology, New York University |
1515
| Bhagwat | Nikhil | | 0000-0001-6073-7141 | Montreal Neurological Institute, McGill University |
16+
| Blair | Ross W. | | 0000-0003-3007-1056 | Department of Psychology, Stanford University |
1617
| Camacho | Milton | | 0000-0002-5379-5076 | Department of Pediadrics, University of Calgary |
1718
| Callenberg | Keith | | 0000-0001-7786-9300 | Department of Psychiatry, University of Pittsburgh |
1819
| Cieslak | Matthew | | 0000-0002-1931-4734 | Perelman School of Medicine, University of Pennsylvania, PA, USA |
19-
| de la Vega | Alejandro | | 0000-0001-9062-3778 | University of Texas at Austin |
20+
| Ciric | Rastko | | 0000-0001-6347-7939 | Department of Psychology, Stanford University |
2021
| Devenyi | Grabriel A. | | 0000-0002-7766-1187 | Department of Psychiatry, McGill University |
22+
| DuPre | Elizabeth | | 0000-0003-1358-196X | SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada |
23+
| de la Vega | Alejandro | | 0000-0001-9062-3778 | University of Texas at Austin |
2124
| Erramuzpe | Asier | | 0000-0002-9402-2184 | Computational Neuroimaging Lab, BioCruces Health Research Institute |
2225
| Feingold | Franklin | | 0000-0002-6533-2909 | Department of Psychology, Stanford University |
2326
| Finc | Karolina | | 0000-0002-0157-030X | Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń |
2427
| Frederick | Blaise B. | | 0000-0001-5832-5279 | McLean Hospital Brain Imaging Center, MA, USA |
2528
| Gau | Rémi | | 0000-0002-1535-9767 | Neuro Data Science ORIGAMI Laboratory, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montréal, Canada |
26-
| Groen | Iris I. A. | | 0000-0002-5536-6128 | Department of Psychology, New York University, NY, USA |
27-
| Gomez | Daniel E. P. | | 0000-0001-8635-021X | Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen |
2829
| Ghosh | Satrajit S. | | 0000-0002-5312-6729 | McGovern Institute for Brain Research, MIT, MA, USA |
30+
| Gomez | Daniel E. P. | | 0000-0001-8635-021X | Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen |
31+
| Gorgolewski | Krzysztof J. | | 0000-0003-3321-7583 | Department of Psychology, Stanford University |
32+
| Groen | Iris I. A. | | 0000-0002-5536-6128 | Department of Psychology, New York University, NY, USA |
2933
| Halchenko | Yaroslav O. | | 0000-0003-3456-2493 | Dartmouth College: Hanover, NH, United States |
3034
| Heinsfeld | Anibal S. | | 0000-0002-2050-0614 | Child Mind Institute |
3135
| Isik | Ayse Ilkay | | 0000-0002-1652-9297 | Max Planck Institute for Empirical Aesthetics |
3236
| Jacoby | Nir | | 0000-0001-7936-9991 | Department of Psychology, Columbia University |
3337
| Jamison | Keith W. | | 0000-0001-7139-6661 | Department of Radiology, Weill Cornell Medicine |
38+
| Kent | James D. | | 0000-0002-4892-2659 | University of Texas at Austin |
3439
| Kruper | John | | 0000-0003-0081-391X | Department of Psychology, University of Washington |
3540
| Legarreta Gorroño | Jon Haitz | @jhlegarreta | 0000-0002-9661-1396 | Brigham and Women's Hospital, Mass General Brigham, Harvard Medical School, MA, USA |
3641
| Liem | Franz | | 0000-0003-0646-4810 | URPP Dynamics of Healthy Aging, University of Zurich |
3742
| Lurie | Daniel J. | | 0000-0001-8012-6399 | Department of Psychology, University of California, Berkeley |
3843
| Ma | Feilong | | 0000-0002-6838-3971 | Dartmouth College: Hanover, NH, United States |
3944
| Madison | Thomas | | 0000-0003-3030-6580 | Department of Pediatrics, University of Minnesota, MN, USA |
45+
| Meisler | Steven | @smeisler | 0000-0002-8888-1572 | Department of Psychiatry, University of Pennsylvania |
4046
| Mentch | Jeff | | 0000-0002-7762-8678 | Speech & Hearing Bioscience & Technology Program, Harvard University |
4147
| Moodie | Craig A. | | 0000-0003-0867-1469 | Department of Psychology, Stanford University |
4248
| Naveau | Mikaël | | 0000-0001-6948-9068 | Cyceron, UMS 3408 (CNRS - UCBN), France |
49+
| Naze | Sebastien | @sebnaze | 0000-0003-0367-402X | QIMR Berghofer, Brisbane, Australia |
4350
| Nielson | Dylan M. | | 0000-0003-4613-6643 | Machine Learning Team, National Institute of Mental Health, USA |
4451
| Nitsch | Alexander | | 0000-0002-5740-9451 | Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany |
4552
| Papadopoulos | Dimitri | | 0000-0002-1242-8990 | Neurospin, CEA |
53+
| Pinsard | Basile | @bpinsard | 0000-0002-4391-3075 | Université de Montréal, Montreal, QC, CA |
4654
| Plunkett | Dillon | | 0000-0001-7822-6024 | Department of Psychology, Harvard University |
4755
| Provins | Céline | | 0000-0002-1668-9629 | Department of Radiology, Lausanne University Hospital and University of Lausanne |
4856
| Rivera-Dompenciel | Adriana | | 0000-0002-3339-4857 | Neuroscience Program, University of Iowa |
4957
| Sadil | Patrick | | 0000-0003-4141-1343 | Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, MD, USA |
58+
| Salo | Taylor | | 0000-0001-9813-3167 | Perelman School of Medicine, University of Pennsylvania, PA, USA |
5059
| Satterthwaite | Theodore D. | | 0000-0001-7072-9399 | Perelman School of Medicine, University of Pennsylvania, PA, USA |
5160
| Schaefer | Theo A.J. | | 0000-0003-4102-559X | Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany |
61+
| Seeley | Saren | @sarenseeley | 0000-0002-9493-8512 | Department of Psychiatry, Icahn School of Medicine at Mount Sinai |
5262
| Sitek | Kevin R. | | 0000-0002-2172-5786 | Speech & Hearing Bioscience & Technology Program, Harvard University |
5363
| Smith | Robert E. | | 0000-0003-3636-4642 | Florey Institute of Neuroscience and Mental Health |
5464
| Sneve | Markus H. | | 0000-0001-7644-7915 | Center for Lifespan Changes in Brain and Cognition, University of Oslo |

.maint/MAINTAINERS.md

Lines changed: 0 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -12,4 +12,3 @@ If you are participating because of your affiliation with another organization (
1212
| Markiewicz | Christopher J. | @effigies | 0000-0002-6533-164X | Department of Psychology, Stanford University, CA, USA | |
1313
| Goncalves | Mathias | @mgxd | 0000-0002-7252-7771 | Department of Psychology, Stanford University, CA, USA | |
1414
| Esteban | Oscar | @oesteban | 0000-0001-8435-6191 | Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland | |
15-
| Pinsard | Basile | @bpinsard | 0000-0002-4391-3075 | Université de Montréal, Montreal, QC, CA | 20.2.x LTS maintainer |

.maint/PIs.md

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -10,8 +10,8 @@ If you are participating because of your affiliation with another organization (
1010

1111
| **Lastname** | **Name** | **Handle** | **ORCID** | **Affiliation** | **Position** |
1212
| --- | --- | --- | --- | --- | --- |
13-
| Esteban | Oscar | @oesteban | 0000-0001-8435-6191 | Department of Radiology, Lausanne University Hospital and University of Lausanne | |
1413
| Milham | Michael P. | | 0000-0003-3532-1210 | Child Mind Institute | |
15-
| Poldrack | Russell A. | @poldrack | 0000-0001-6755-0259 | Department of Psychology, Stanford University, CA, USA | -1 |
16-
| Rokem | Ariel | @arokem | 0000-0003-0679-1985 | The University of Washington eScience Institute, WA, USA | |
1714
| Satterthwaite | Theodore D. | | 0000-0001-7072-9399 | Perelman School of Medicine, University of Pennsylvania, PA, USA | |
15+
| Rokem | Ariel | @arokem | 0000-0003-0679-1985 | The University of Washington eScience Institute, WA, USA | |
16+
| Poldrack | Russell A. | @poldrack | 0000-0001-6755-0259 | Department of Psychology, Stanford University, CA, USA | -1 |
17+
| Esteban | Oscar | @oesteban | 0000-0001-8435-6191 | Department of Radiology, Lausanne University Hospital and University of Lausanne | |

.maint/developers.json

Lines changed: 0 additions & 62 deletions
This file was deleted.

.maint/former.json

Lines changed: 0 additions & 5 deletions
This file was deleted.

.maint/paper_author_list.py

Lines changed: 0 additions & 60 deletions
This file was deleted.

.maint/requirements.txt

Lines changed: 0 additions & 2 deletions
This file was deleted.

0 commit comments

Comments
 (0)