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DOC: Update references to new nipreps GH organization
``` sed -i 's+poldracklab/smriprep+nipreps/smriprep+g' ``` and update ``docs/conf.py`` with new url for the python doctree reference.
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CHANGES.rst

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@@ -357,7 +357,7 @@ Bug-fix release in the 1.5.x series.
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This release fixes a bug specifically for T1w images with dimensions ≤256 voxels
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but a field-of-view >256mm.
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* FIX: Calculate FoV with shape and zooms (poldracklab/smriprep#161)
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* FIX: Calculate FoV with shape and zooms (nipreps/smriprep#161)
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1.5.6 (January 22, 2020)
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------------------------
@@ -622,7 +622,7 @@ Hotfix release intended for Singularity users. For further detail, please see
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1.3.0 (February 7, 2019)
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------------------------
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We start the 1.3.x series including a few bugfixes, housekeeping duty and a refactors
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to leverage `sMRIPrep <https://github.com/poldracklab/smriprep>`__ (which is a fork of
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to leverage `sMRIPrep <https://github.com/nipreps/smriprep>`__ (which is a fork of
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fMRIPrep's anatomical workflow), pybids>=0.7 for querying dataset, and
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`TemplateFlow <https://github.com/templateflow>`__ for handling standard spaces.
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docs/conf.py

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"nipype": ("https://nipype.readthedocs.io/en/latest/", None),
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"niworkflows": ("https://www.nipreps.org/niworkflows/", None),
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"sdcflows": ("https://www.nipreps.org/sdcflows/", None),
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"smriprep": ("https://poldracklab.github.io/smriprep/", None),
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"smriprep": ("https://www.nipreps.org/smriprep/", None),
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"templateflow": ("https://www.templateflow.org/python-client", None),
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}
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docs/faq.rst

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@@ -29,7 +29,7 @@ What if I find some images have undergone some pre-processing already (e.g., my
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These images imply an unknown level of preprocessing (e.g. was it already bias-field corrected?),
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which makes it difficult to decide on best-practices for further processing.
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Hence, supporting such images was considered very low priority for *fMRIPrep*.
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For example, see `#707 <https://github.com/poldracklab/smriprep/issues/12>`_ and an illustration of
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For example, see `#707 <https://github.com/nipreps/smriprep/issues/12>`_ and an illustration of
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downstream consequences in `#939 <https://github.com/poldracklab/fmriprep/issues/939>`_.
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So for OpenFMRI, we've been excluding these subjects, and for user-supplied data, we would recommend

setup.cfg

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@@ -35,7 +35,7 @@ install_requires =
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pyyaml
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requests
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sdcflows ~= 1.3.1
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smriprep @ git+https://github.com/poldracklab/smriprep.git@master
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smriprep @ git+https://github.com/nipreps/smriprep.git@master
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tedana >= 0.0.9a1, < 0.0.10
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templateflow ~= 0.6
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toml

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