TEST: Parameterize test

Author: effigies

fmriprep/workflows/bold/tests/test_util.py

@@ -1,7 +1,9 @@
-''' Testing module for fmriprep.workflows.base '''
+''' Testing module for fmriprep.workflows.bold.util '''
 import pytest
+import os
 
 import numpy as np
+from nipype.utils.filemanip import fname_presuffix
 from nilearn.image import load_img
 from ..util import init_bold_reference_wf
 
@@ -16,7 +18,29 @@ def symmetric_overlap(img1, img2):
     return overlap / np.sqrt(total1 * total2)
 
 
-@pytest.skip
+@pytest.mark.skipif(not os.getenv('FMRIPREP_REGRESSION_SOURCE') or
+                    not os.getenv('FMRIPREP_REGRESSION_TARGETS'))
+@pytest.mark.parametrize('input_name,expected_fname', [
+    (os.path.join(os.getenv('FMRIPREP_REGRESSION_SOURCE', ''),
+                  base_fname),
+     fname_presuffix(base_fname, suffix='_mask', use_ext=True,
+                     new_path=os.getenv('FMRIPREP_REGRESSION_TARGETS', '')))
+    for base_fname in (
+        'ds000116/sub-12_task-visualoddballwithbuttonresponsetotargetstimuli_run-02_bold.nii.gz',
+        # 'ds000133/sub-06_ses-post_task-rest_run-01_bold.nii.gz',
+        # 'ds000140/sub-32_task-heatpainwithregulationandratings_run-02_bold.nii.gz',
+        # 'ds000157/sub-23_task-passiveimageviewing_bold.nii.gz',
+        # 'ds000210/sub-06_task-rest_run-01_echo-1_bold.nii.gz',
+        # 'ds000210/sub-06_task-rest_run-01_echo-2_bold.nii.gz',
+        # 'ds000210/sub-06_task-rest_run-01_echo-3_bold.nii.gz',
+        # 'ds000216/sub-03_task-rest_echo-1_bold.nii.gz',
+        # 'ds000216/sub-03_task-rest_echo-2_bold.nii.gz',
+        # 'ds000216/sub-03_task-rest_echo-3_bold.nii.gz',
+        # 'ds000216/sub-03_task-rest_echo-4_bold.nii.gz',
+        # 'ds000237/sub-03_task-MemorySpan_acq-multiband_run-01_bold.nii.gz',
+        # 'ds000237/sub-06_task-MemorySpan_acq-multiband_run-01_bold.nii.gz',
+        )
+    ])
 def test_masking(input_fname, expected_fname):
     bold_reference_wf = init_bold_reference_wf(enhance_t2=True)
     bold_reference_wf.inputs.inputnode.bold_file = input_fname