fix(cli,tests): fix typos on MNI152NLin6Asym name, improve Circle config

Author: oesteban

.circleci/config.yml

@@ -392,6 +392,7 @@ jobs:
                 -e FMRIPREP_DEV 1 -u $(id -u) \
                 --config $PWD/nipype.cfg -w /tmp/ds005/work \
                 /tmp/data/ds005 /tmp/ds005/derivatives participant \
+                --output-spaces MNI152NLin2009cAsym MNI152NLin6Asym \
                 --sloppy --write-graph --mem_mb 4096 \
                 --nthreads 2 --anat-only -vv
       - save_cache:

fmriprep/cli/run.py

@@ -640,7 +640,7 @@ def parse_spaces(opts):
     from sys import stderr
     from collections import OrderedDict
     from templateflow.api import templates as get_templates
-    # Set the default template to 'MNI152NLin2009c'
+    # Set the default template to 'MNI152NLin2009cAsym'
     output_spaces = opts.output_spaces or OrderedDict([('MNI152NLin2009cAsym', {})])
 
     if opts.template:
@@ -678,17 +678,17 @@ def parse_spaces(opts):
     # Validity of some inputs
     # ERROR check if use_aroma was specified, but the correct template was not
     if opts.use_aroma and 'MNI152NLin6Asym' not in output_spaces:
-        output_spaces['MNI152Lin6Asym'] = {'res': 2}
+        output_spaces['MNI152NLin6Asym'] = {'res': 2}
         print("""\
-Option "--use-aroma" requires functional images to be resampled to MNI152Lin6Asym space. \
-The argument "MNI152Lin6Asym:res-2" has been automatically added to the list of output spaces \
+Option "--use-aroma" requires functional images to be resampled to MNI152NLin6Asym space. \
+The argument "MNI152NLin6Asym:res-2" has been automatically added to the list of output spaces \
 (option ``--output-spaces``).""", file=stderr)
 
     if opts.cifti_output and 'fsLR' not in output_spaces:
         if 'MNI152NLin6Asym' not in output_spaces:
             output_spaces['MNI152NLin6Asym'] = {'res': 2}
             print("""Option ``--cifti-output`` requires functional images to be resampled to \
-``MNI152LinAsym`` space. Such template identifier has been automatically added to the list \
+``MNI152NLin6Asym`` space. Such template identifier has been automatically added to the list \
 of output spaces (option "--output-space").""", file=stderr)
         if not [s for s in output_spaces if s in ('fsaverage5', 'fsaverage6')]:
             output_spaces['fsaverage5'] = {}