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lines changed Original file line number Diff line number Diff line change 11.. _Nipype : http://nipype.readthedocs.io/en/latest/
22.. _BIDS : http://bids.neuroimaging.io
3- .. _`BIDS Derivatives` : https://docs.google.com/document/d/17ebopupQxuRwp7U7TFvS6BH03ALJOgGHufxK8ToAvyI
4- .. _`BIDS Derivatives RC1` : https://docs.google.com/document/d/17ebopupQxuRwp7U7TFvS6BH03ALJOgGHufxK8ToAvyI
3+ .. _`BIDS Derivatives` : https://bids-specification.readthedocs.io/en/stable/05-derivatives/01-introduction.html
4+ .. _`BEP 011` : https://bids-specification.readthedocs.io/en/bep011/05-derivatives/04-structural-derivatives.html
5+ .. _`BEP 012` : https://bids-specification.readthedocs.io/en/bep012/05-derivatives/05-functional-derivatives.html
56.. _Installation : installation.html
67.. _workflows : workflows.html
78.. _FSL : https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/
Original file line number Diff line number Diff line change 66Outputs of *fMRIPrep *
77---------------------
88*fMRIPrep * outputs conform to the :abbr: `BIDS ( brain imaging data structure ) `
9- Derivatives specification (see `BIDS Derivatives RC1 `_).
9+ Derivatives specification (see `BIDS Derivatives `_, along with the
10+ upcoming `BEP 011 `_ and `BEP 012 `_).
1011*fMRIPrep * generates three broad classes of outcomes:
1112
12131. **Visual QA (quality assessment) reports **:
@@ -46,7 +47,7 @@ Derivatives of *fMRIPrep* (preprocessed data)
4647---------------------------------------------
4748Preprocessed, or derivative, data are written to
4849``<output dir>/fmriprep/sub-<subject_label>/ ``.
49- The `BIDS Derivatives RC1 `_ specification describes the naming and metadata conventions we follow.
50+ The `BIDS Derivatives `_ specification describes the naming and metadata conventions we follow.
5051
5152Anatomical derivatives
5253~~~~~~~~~~~~~~~~~~~~~~
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