FIX: Retrieve atlas ROIs at requested density (#3179)

effigies · web-flow · commit 3ee6a1fbcf4a · 2023-12-08T15:22:49.000-05:00
Fixes #3178. Depends on nipreps/smriprep#405 to actually work, but can be merged separately.
diff --git a/fmriprep/workflows/bold/resampling.py b/fmriprep/workflows/bold/resampling.py
@@ -641,8 +641,8 @@ def init_bold_fsLR_resampling_wf(
     ]
     atlases = smriprep_data.load_resource('atlases')
     select_surfaces.inputs.template_roi = [
-        str(atlases / 'L.atlasroi.32k_fs_LR.shape.gii'),
-        str(atlases / 'R.atlasroi.32k_fs_LR.shape.gii'),
+        str(atlases / f'L.atlasroi.{fslr_density}_fs_LR.shape.gii'),
+        str(atlases / f'R.atlasroi.{fslr_density}_fs_LR.shape.gii'),
     ]
 
     # RibbonVolumeToSurfaceMapping.sh

Original file line number	Diff line number	Diff line change
`@@ -641,8 +641,8 @@ def init_bold_fsLR_resampling_wf(`
`641`	`641`	`]`
`642`	`642`	`atlases = smriprep_data.load_resource('atlases')`
`643`	`643`	`select_surfaces.inputs.template_roi = [`
`644`		`- str(atlases / 'L.atlasroi.32k_fs_LR.shape.gii'),`
`645`		`- str(atlases / 'R.atlasroi.32k_fs_LR.shape.gii'),`
	`644`	`+ str(atlases / f'L.atlasroi.{fslr_density}_fs_LR.shape.gii'),`
	`645`	`+ str(atlases / f'R.atlasroi.{fslr_density}_fs_LR.shape.gii'),`
`646`	`646`	`]`
`647`	`647`
`648`	`648`	`# RibbonVolumeToSurfaceMapping.sh`