88
99
1010def write_bidsignore (deriv_dir ):
11- bids_ignore = [
11+ bids_ignore = (
1212 "*.html" , "logs/" , "figures/" , # Reports
1313 "*_xfm.*" , # Unspecified transform files
1414 "*.surf.gii" , # Unspecified structural outputs
1515 # Unspecified functional outputs
1616 "*_boldref.nii.gz" , "*_bold.func.gii" ,
1717 "*_mixing.tsv" , "*_AROMAnoiseICs.csv" , "*_regressors.tsv" ,
18- ]
18+ )
1919 ignore_file = Path (deriv_dir ) / ".bidsignore"
2020
2121 ignore_file .write_text ("\n " .join (bids_ignore ) + "\n " )
@@ -50,7 +50,7 @@ def write_derivative_description(bids_dir, deriv_dir):
5050 if 'FMRIPREP_SINGULARITY_URL' in os .environ :
5151 desc ['GeneratedBy' ][0 ]['Container' ] = {
5252 "Type" : "singularity" ,
53- "URI" : os .environ [ 'FMRIPREP_SINGULARITY_URL' ]
53+ "URI" : os .getenv ( 'FMRIPREP_SINGULARITY_URL' )
5454 }
5555
5656 # Keys deriving from source dataset
@@ -61,7 +61,7 @@ def write_derivative_description(bids_dir, deriv_dir):
6161
6262 if 'DatasetDOI' in orig_desc :
6363 desc ['SourceDatasets' ] = [{
64- 'URL' : 'https://doi.org/{}' . format ( orig_desc [' DatasetDOI' ]) ,
64+ 'URL' : f 'https://doi.org/{ orig_desc [" DatasetDOI" ] } ' ,
6565 'DOI' : orig_desc ['DatasetDOI' ]
6666 }]
6767 if 'License' in orig_desc :
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