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Merge pull request #1332 from jdkent/add_aroma_mask
[FIX] Explicitly pass bold mask to AROMA
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fmriprep/workflows/bold/confounds.py

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@@ -581,7 +581,8 @@ def _getbtthresh(medianval):
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# connect nodes to ICA-AROMA
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(smooth, ica_aroma, [('smoothed_file', 'in_file')]),
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(bold_mni_trans_wf, ica_aroma, [
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('outputnode.bold_mask_mni', 'report_mask')]),
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('outputnode.bold_mask_mni', 'report_mask'),
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('outputnode.bold_mask_mni', 'mask')]),
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(melodic, ica_aroma, [('out_dir', 'melodic_dir')]),
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# generate tsvs from ICA-AROMA
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(ica_aroma, ica_aroma_confound_extraction, [('out_dir', 'in_directory')]),

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