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lines changed Original file line number Diff line number Diff line change @@ -201,7 +201,7 @@ jobs:
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name : Run fMRIPrep tests
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no_output_timeout : 2h
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command : |
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- docker run -ti --rm=false \
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+ docker run -u $USER - ti --rm=false \
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--entrypoint="py.test" poldracklab/fmriprep:latest \
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/root/src/fmriprep/ --doctest-modules --ignore=docs --ignore=setup.py
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- run :
@@ -264,7 +264,7 @@ jobs:
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name : Build fMRIPrep documentation
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no_output_timeout : 2h
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command : |
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- docker run -ti --rm=false -v $PWD:/_build_html \
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+ docker run -u $USER - ti --rm=false -v $PWD:/_build_html \
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--entrypoint=sphinx-build poldracklab/fmriprep:latest \
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-T -E -b html -d _build/doctrees-readthedocs -W -D \
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language=en /root/src/fmriprep/docs/ /_build_html 2>&1 \
Original file line number Diff line number Diff line change @@ -160,7 +160,9 @@ RUN echo "${VERSION}" > /root/src/fmriprep/fmriprep/VERSION && \
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rm -rf ~/.cache/pip
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RUN ldconfig
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- WORKDIR /tmp/
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+ WORKDIR /scratch
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+ RUN chmod 777 /scratch
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+
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ENTRYPOINT ["/usr/local/miniconda/bin/fmriprep" ]
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ARG BUILD_DATE
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