[skip ci] Apply suggestions from code review

Co-Authored-By: oesteban <[email protected]>

Author: effigies

docs/usage.rst

@@ -86,7 +86,7 @@ Therefore, in upcoming versions of fMRIPrep, it will be possible to run it with
 ``--output-spaces MNIPediatricAsym:res-2:cohort-2`` where ``cohort-2`` would select
 the template instance for the, say, 24-48 months old range.
 
-When specifying surface spaces (e.g. ``fsaverage``), the legacy identifiers from
+When specifying surface spaces (e.g., ``fsaverage``), the legacy identifiers from
 FreeSurfer will be supported (e.g. ``fsaverage5``) although the use of the density
 modifier would be preferred (i.e. ``fsaverage:den-10k`` for ``fsaverage5``).
 
@@ -132,7 +132,7 @@ Preprocessing blocks depending on standard templates
 
 Some modules of the pipeline (e.g. the ICA-AROMA denoising, the generation of
 HCP compatible *grayordinates* files, or the *fieldmap-less* distortion correction)
-perform on specific template spaces.
+operate in specific template spaces.
 When selecting those modules to be included (using any of the following flags:
 ``--use-aroma``, ``--cifti-outputs``, ``--use-syn-sdc``) will modify the list of
 output spaces to include the space identifiers they require, should the

docs/workflows.rst

@@ -146,8 +146,9 @@ This file should be placed in the ``sub-*/anat`` directory of the BIDS dataset
 to be run through *fMRIPrep*.
 Because lesion masks are not currently part of the BIDS specification, it is also necessary to
 include a ``.bidsignore`` file in the root of your dataset directory. This will prevent
-`bids-validator <https://github.com/bids-standard/bids-validator#bidsignore>`_ from complaining that your dataset not BIDS valid, which prevents
-*fMRIPrep* from running. Your ``.bidsignore`` file should include the following line::
+`bids-validator <https://github.com/bids-standard/bids-validator#bidsignore>`_ from complaining
+that your dataset is not valid BIDS, which prevents *fMRIPrep* from running.
+Your ``.bidsignore`` file should include the following line::
 
 *lesion_roi.nii.gz
 
@@ -577,7 +578,7 @@ regressors (a separate GLM with both noise and signal regressors needs to be use
 Therefore instead of regressors, *fMRIPrep* produces *non*-aggressive denoised 4D NIFTI
 files in the MNI space:
 
-``*bold_space-MNI152NLin6Asym-smoothAROMAnonaggr_brainmask.nii.gz``
+``*bold_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_brainmask.nii.gz``
 
 Additionally, the MELODIC mix and noise component indices will
 be generated, so non-aggressive denoising can be manually performed in the T1w space with ``fsl_regfilt``, *e.g.*::

fmriprep/workflows/bold/base.py

@@ -401,7 +401,7 @@ def init_func_preproc_wf(
         name='summary', mem_gb=DEFAULT_MEMORY_MIN_GB, run_without_submitting=True)
 
     # CIfTI output: currently, we only support fsaverage{5,6}
-    cifti_spaces = set([s for s in output_spaces.keys() if s in ('fsaverage5', 'fsaverage6')])
+    cifti_spaces = set(s for s in output_spaces.keys() if s in ('fsaverage5', 'fsaverage6'))
     fsaverage_den = output_spaces.get('fsaverage', {}).get('den')
     if fsaverage_den:
         cifti_spaces.add(FSAVERAGE_DENSITY[fsaverage_den])