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Merge remote-tracking branch 'upstream/master' into enh/3dvolreg
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‎.circleci/config.yml

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- ds005-anat-v7-{{ .Branch }}-{{ epoch }}
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- ds005-anat-v7-{{ .Branch }}
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- ds005-anat-v7-master
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- ds005-anat-v7-
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- ds005-anat-v8-{{ .Branch }}-{{ epoch }}
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- ds005-anat-v8-{{ .Branch }}
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- ds005-anat-v8-master
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- ds005-anat-v8-
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- run:
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name: Setting up test
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command: |
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--debug --write-graph --mem_mb 4096 \
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--nthreads 2 --anat-only -vv
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- save_cache:
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key: ds005-anat-v7-{{ .Branch }}-{{ epoch }}
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key: ds005-anat-v8-{{ .Branch }}-{{ epoch }}
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paths:
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- /tmp/ds005/work
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- /tmp/ds005/derivatives/fmriprep
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- ds054-anat-v5-{{ .Branch }}-{{ epoch }}
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- ds054-anat-v5-{{ .Branch }}
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- ds054-anat-v5-master
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- ds054-anat-v5-
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- ds054-anat-v6-{{ .Branch }}-{{ epoch }}
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- ds054-anat-v6-{{ .Branch }}
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- ds054-anat-v6-master
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- ds054-anat-v6-
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name: Setting up test
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--fs-no-reconall --debug --write-graph \
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--mem_mb 4096 --nthreads 2 --anat-only -vv
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key: ds054-anat-v5-{{ .Branch }}-{{ epoch }}
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key: ds054-anat-v6-{{ .Branch }}-{{ epoch }}
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paths:
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- ds210-anat-v2-{{ epoch }}
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- ds210-anat-v2-
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- ds210-anat-v3-{{ epoch }}
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- ds210-anat-v3-
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name: Setting up test
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--fs-no-reconall --debug --write-graph \
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--mem_mb 4096 --nthreads 2 --anat-only -vv
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- save_cache:
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key: ds210-anat-v2-{{ epoch }}
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key: ds210-anat-v3-{{ epoch }}
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‎.circleci/ds005_outputs.txt

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@@ -6,60 +6,64 @@ fmriprep/logs/CITATION.md
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fmriprep/logs/CITATION.tex
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fmriprep/sub-01
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fmriprep/sub-01/anat
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fmriprep/sub-01/anat/sub-01_T1w_brainmask.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_class-CSF_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_class-GM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_class-WM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_dtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_inflated.L.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_inflated.R.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_label-aparcaseg_roi.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_label-aseg_roi.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_midthickness.L.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_midthickness.R.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_pial.L.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_pial.R.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_preproc.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_smoothwm.L.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_smoothwm.R.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_brainmask.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_class-CSF_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_class-GM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_class-WM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_dtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_preproc.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_target-T1w_warp.h5
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fmriprep/sub-01/anat/sub-01_T1w_space-orig_target-T1w_affine.txt
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fmriprep/sub-01/anat/sub-01_T1w_target-fsnative_affine.txt
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fmriprep/sub-01/anat/sub-01_T1w_target-MNI152NLin2009cAsym_warp.h5
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fmriprep/sub-01/anat/sub-01_brainmask.nii.gz
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fmriprep/sub-01/anat/sub-01_class-CSF_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_class-GM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_class-WM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_dtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_inflated.L.surf.gii
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fmriprep/sub-01/anat/sub-01_inflated.R.surf.gii
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fmriprep/sub-01/anat/sub-01_label-aparcaseg_roi.nii.gz
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fmriprep/sub-01/anat/sub-01_label-aseg_roi.nii.gz
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fmriprep/sub-01/anat/sub-01_midthickness.L.surf.gii
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fmriprep/sub-01/anat/sub-01_midthickness.R.surf.gii
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fmriprep/sub-01/anat/sub-01_pial.L.surf.gii
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fmriprep/sub-01/anat/sub-01_pial.R.surf.gii
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fmriprep/sub-01/anat/sub-01_preproc.nii.gz
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fmriprep/sub-01/anat/sub-01_smoothwm.L.surf.gii
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fmriprep/sub-01/anat/sub-01_smoothwm.R.surf.gii
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_brainmask.nii.gz
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_class-CSF_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_class-GM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_class-WM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_dtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_preproc.nii.gz
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_target-T1w_warp.h5
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fmriprep/sub-01/anat/sub-01_space-orig_target-T1w_affine.txt
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fmriprep/sub-01/anat/sub-01_target-fsnative_affine.txt
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fmriprep/sub-01/anat/sub-01_target-MNI152NLin2009cAsym_warp.h5
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fmriprep/sub-01/func
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_AROMAnoiseICs.csv
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_confounds.tsv
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_MELODICmix.tsv
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-cifti_variant-space1_preproc.dtseries.json
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-cifti_variant-space1_preproc.dtseries.nii
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-fsaverage5.L.func.gii
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-fsaverage5.R.func.gii
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-MNI152NLin2009cAsym_preproc.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-MNI152NLin2009cAsym_variant-smoothAROMAnonaggr_preproc.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-T1w_brainmask.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-T1w_label-aparcaseg_roi.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-T1w_label-aseg_roi.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-T1w_preproc.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_AROMAnoiseICs.csv
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_confounds.tsv
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_MELODICmix.tsv
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-cifti_variant-space1_preproc.dtseries.json
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-cifti_variant-space1_preproc.dtseries.nii
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-fsaverage5.L.func.gii
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-fsaverage5.R.func.gii
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-MNI152NLin2009cAsym_preproc.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-MNI152NLin2009cAsym_variant-smoothAROMAnonaggr_preproc.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-T1w_brainmask.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-T1w_label-aparcaseg_roi.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-T1w_label-aseg_roi.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-T1w_preproc.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_AROMAnoiseICs.csv
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_confounds.tsv
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_MELODICmix.tsv
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-cifti_variant-space1_preproc.dtseries.json
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-cifti_variant-space1_preproc.dtseries.nii
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-fsaverage5.L.func.gii
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-fsaverage5.R.func.gii
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-MNI152NLin2009cAsym_boldref.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-MNI152NLin2009cAsym_brainmask.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-MNI152NLin2009cAsym_preproc.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-MNI152NLin2009cAsym_variant-smoothAROMAnonaggr_preproc.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_boldref.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_brainmask.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_label-aparcaseg_roi.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_label-aseg_roi.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_preproc.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_AROMAnoiseICs.csv
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_confounds.tsv
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_MELODICmix.tsv
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-cifti_variant-space1_preproc.dtseries.json
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-cifti_variant-space1_preproc.dtseries.nii
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-fsaverage5.L.func.gii
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-fsaverage5.R.func.gii
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_boldref.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_brainmask.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_preproc.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_variant-smoothAROMAnonaggr_preproc.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_boldref.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_brainmask.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_label-aparcaseg_roi.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_label-aseg_roi.nii.gz
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_preproc.nii.gz
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/tmp/ds005/derivatives

‎.circleci/ds005_partial_outputs.txt

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fmriprep/sub-01/anat
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fmriprep/sub-01/anat/sub-01_T1w_brainmask.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_class-CSF_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_class-GM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_class-WM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_dtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_inflated.L.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_inflated.R.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_label-aparcaseg_roi.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_label-aseg_roi.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_midthickness.L.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_midthickness.R.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_pial.L.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_pial.R.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_preproc.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_smoothwm.L.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_smoothwm.R.surf.gii
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_brainmask.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_class-CSF_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_class-GM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_class-WM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_dtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_preproc.nii.gz
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fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_target-T1w_warp.h5
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fmriprep/sub-01/anat/sub-01_T1w_space-orig_target-T1w_affine.txt
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fmriprep/sub-01/anat/sub-01_T1w_target-fsnative_affine.txt
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fmriprep/sub-01/anat/sub-01_T1w_target-MNI152NLin2009cAsym_warp.h5
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fmriprep/sub-01/anat/sub-01_brainmask.nii.gz
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fmriprep/sub-01/anat/sub-01_class-CSF_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_class-GM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_class-WM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_dtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_inflated.L.surf.gii
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fmriprep/sub-01/anat/sub-01_inflated.R.surf.gii
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fmriprep/sub-01/anat/sub-01_label-aparcaseg_roi.nii.gz
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fmriprep/sub-01/anat/sub-01_label-aseg_roi.nii.gz
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fmriprep/sub-01/anat/sub-01_midthickness.L.surf.gii
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fmriprep/sub-01/anat/sub-01_midthickness.R.surf.gii
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fmriprep/sub-01/anat/sub-01_pial.L.surf.gii
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fmriprep/sub-01/anat/sub-01_pial.R.surf.gii
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fmriprep/sub-01/anat/sub-01_preproc.nii.gz
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fmriprep/sub-01/anat/sub-01_smoothwm.L.surf.gii
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fmriprep/sub-01/anat/sub-01_smoothwm.R.surf.gii
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_brainmask.nii.gz
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_class-CSF_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_class-GM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_class-WM_probtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_dtissue.nii.gz
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_preproc.nii.gz
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fmriprep/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_target-T1w_warp.h5
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fmriprep/sub-01/anat/sub-01_space-orig_target-T1w_affine.txt
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fmriprep/sub-01/anat/sub-01_target-fsnative_affine.txt
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fmriprep/sub-01/anat/sub-01_target-MNI152NLin2009cAsym_warp.h5
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fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_preproc.nii.gz
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