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CI: Run sloppy registration
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.circleci/config.yml

Lines changed: 8 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -388,7 +388,7 @@ jobs:
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-e FMRIPREP_DEV 1 -u $(id -u) \
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--config $PWD/nipype.cfg -w /tmp/ds005/work \
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/tmp/data/ds005 /tmp/ds005/derivatives participant \
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--debug --write-graph --mem_mb 4096 \
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--sloppy --write-graph --mem_mb 4096 \
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--nthreads 2 --anat-only -vv
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- save_cache:
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key: ds005-anat-v9-{{ .Branch }}-{{ epoch }}
@@ -408,7 +408,7 @@ jobs:
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-e FMRIPREP_DEV 1 -u $(id -u) \
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--config $PWD/nipype.cfg -w /tmp/ds005/work \
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/tmp/data/ds005 /tmp/ds005/derivatives participant \
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--debug --write-graph --use-syn-sdc --mem_mb 4096 \
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--sloppy --write-graph --use-syn-sdc --mem_mb 4096 \
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--ignore-aroma-denoising-errors --use-aroma \
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--output-space T1w template fsaverage5 \
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--template-resampling-grid native \
@@ -435,7 +435,7 @@ jobs:
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-e FMRIPREP_DEV 1 -u $(id -u) \
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--config $PWD/nipype.cfg -w /tmp/ds005/work \
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/tmp/data/ds005 /tmp/ds005/derivatives_partial participant \
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--debug --write-graph --use-syn-sdc --mem_mb 4096 \
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--sloppy --write-graph --use-syn-sdc --mem_mb 4096 \
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--output-space T1w template fsaverage5 \
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--ignore-aroma-denoising-errors --use-aroma \
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--template-resampling-grid native \
@@ -517,7 +517,7 @@ jobs:
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-e FMRIPREP_DEV 1 \
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--config $PWD/nipype.cfg -w /tmp/ds054/work \
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/tmp/data/ds054 /tmp/ds054/derivatives participant \
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--fs-no-reconall --debug --write-graph \
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--fs-no-reconall --sloppy --write-graph \
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--mem_mb 4096 --nthreads 2 --anat-only -vv
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- save_cache:
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key: ds054-anat-v7-{{ .Branch }}-{{ epoch }}
@@ -537,7 +537,7 @@ jobs:
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-e FMRIPREP_DEV 1 \
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--config $PWD/nipype.cfg -w /tmp/ds054/work \
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/tmp/data/ds054 /tmp/ds054/derivatives participant \
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--fs-no-reconall --debug \
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--fs-no-reconall --sloppy \
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--output-space T1w template \
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--template-resampling-grid 2mm \
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--mem_mb 4096 --nthreads 2 -vv
@@ -562,7 +562,7 @@ jobs:
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-e FMRIPREP_DEV 1 \
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--config $PWD/nipype.cfg -w /tmp/ds054/work \
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/tmp/data/ds054 /tmp/ds054/derivatives participant \
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--fs-no-reconall --debug --write-graph \
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--fs-no-reconall --sloppy --write-graph \
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--output-space T1w template \
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--template-resampling-grid 2mm \
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--reports-only --run-uuid $UUID
@@ -633,7 +633,7 @@ jobs:
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-e FMRIPREP_DEV 1 \
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--config $PWD/nipype.cfg -w /tmp/ds210/work \
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/tmp/data/ds210 /tmp/ds210/derivatives participant \
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--fs-no-reconall --debug --write-graph \
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--fs-no-reconall --sloppy --write-graph \
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--mem_mb 4096 --nthreads 2 --anat-only -vv
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- save_cache:
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key: ds210-anat-v4-{{ epoch }}
@@ -651,7 +651,7 @@ jobs:
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/tmp/data/ds210 /tmp/ds210/derivatives participant \
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--fs-no-reconall --t2s-coreg --use-syn-sdc \
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--template-resampling-grid native \
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--debug --write-graph --mem_mb 4096 --nthreads 2 -vv
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--sloppy --write-graph --mem_mb 4096 --nthreads 2 -vv
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- run:
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name: Checking outputs of fMRIPrep
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command: |

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