@@ -218,39 +218,39 @@ def init_fmriprep_wf(
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reportlets_dir = os .path .join (work_dir , 'reportlets' )
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for subject_id in subject_list :
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single_subject_wf = init_single_subject_wf (
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- layout = layout ,
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- subject_id = subject_id ,
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- task_id = task_id ,
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- echo_idx = echo_idx ,
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- name = "single_subject_" + subject_id + "_wf" ,
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- reportlets_dir = reportlets_dir ,
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- output_dir = output_dir ,
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- ignore = ignore ,
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- debug = debug ,
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- low_mem = low_mem ,
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anat_only = anat_only ,
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- longitudinal = longitudinal ,
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- t2s_coreg = t2s_coreg ,
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- omp_nthreads = omp_nthreads ,
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- skull_strip_template = skull_strip_template ,
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- skull_strip_fixed_seed = skull_strip_fixed_seed ,
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- freesurfer = freesurfer ,
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- output_spaces = output_spaces ,
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- medial_surface_nan = medial_surface_nan ,
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- cifti_output = cifti_output ,
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- hires = hires ,
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- use_bbr = use_bbr ,
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+ aroma_melodic_dim = aroma_melodic_dim ,
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bold2t1w_dof = bold2t1w_dof ,
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+ cifti_output = cifti_output ,
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+ debug = debug ,
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+ echo_idx = echo_idx ,
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+ err_on_aroma_warn = err_on_aroma_warn ,
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fmap_bspline = fmap_bspline ,
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fmap_demean = fmap_demean ,
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- use_syn = use_syn ,
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force_syn = force_syn ,
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- use_aroma = use_aroma ,
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- aroma_melodic_dim = aroma_melodic_dim ,
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- err_on_aroma_warn = err_on_aroma_warn ,
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+ freesurfer = freesurfer ,
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+ hires = hires ,
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+ ignore = ignore ,
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+ layout = layout ,
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+ longitudinal = longitudinal ,
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+ low_mem = low_mem ,
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+ medial_surface_nan = medial_surface_nan ,
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+ name = "single_subject_" + subject_id + "_wf" ,
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+ omp_nthreads = omp_nthreads ,
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+ output_dir = output_dir ,
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+ output_spaces = output_spaces ,
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regressors_all_comps = regressors_all_comps ,
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- regressors_fd_th = regressors_fd_th ,
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regressors_dvars_th = regressors_dvars_th ,
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+ regressors_fd_th = regressors_fd_th ,
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+ reportlets_dir = reportlets_dir ,
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+ skull_strip_fixed_seed = skull_strip_fixed_seed ,
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+ skull_strip_template = skull_strip_template ,
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+ subject_id = subject_id ,
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+ t2s_coreg = t2s_coreg ,
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+ task_id = task_id ,
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+ use_aroma = use_aroma ,
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+ use_bbr = use_bbr ,
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+ use_syn = use_syn ,
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)
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single_subject_wf .config ['execution' ]['crashdump_dir' ] = (
@@ -345,7 +345,7 @@ def init_single_subject_wf(
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('T1w', {}), ('fsnative', {})]),
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reportlets_dir='.',
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regressors_all_comps=False,
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- regressors_dvars_th=1.5
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+ regressors_dvars_th=1.5,
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regressors_fd_th=0.5,
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skull_strip_fixed_seed=False,
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skull_strip_template='OASIS30ANTs',
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