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fix(docs): add missing comma after function argument
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fmriprep/workflows/base.py

Lines changed: 27 additions & 27 deletions
Original file line numberDiff line numberDiff line change
@@ -218,39 +218,39 @@ def init_fmriprep_wf(
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reportlets_dir = os.path.join(work_dir, 'reportlets')
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for subject_id in subject_list:
220220
single_subject_wf = init_single_subject_wf(
221-
layout=layout,
222-
subject_id=subject_id,
223-
task_id=task_id,
224-
echo_idx=echo_idx,
225-
name="single_subject_" + subject_id + "_wf",
226-
reportlets_dir=reportlets_dir,
227-
output_dir=output_dir,
228-
ignore=ignore,
229-
debug=debug,
230-
low_mem=low_mem,
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anat_only=anat_only,
232-
longitudinal=longitudinal,
233-
t2s_coreg=t2s_coreg,
234-
omp_nthreads=omp_nthreads,
235-
skull_strip_template=skull_strip_template,
236-
skull_strip_fixed_seed=skull_strip_fixed_seed,
237-
freesurfer=freesurfer,
238-
output_spaces=output_spaces,
239-
medial_surface_nan=medial_surface_nan,
240-
cifti_output=cifti_output,
241-
hires=hires,
242-
use_bbr=use_bbr,
222+
aroma_melodic_dim=aroma_melodic_dim,
243223
bold2t1w_dof=bold2t1w_dof,
224+
cifti_output=cifti_output,
225+
debug=debug,
226+
echo_idx=echo_idx,
227+
err_on_aroma_warn=err_on_aroma_warn,
244228
fmap_bspline=fmap_bspline,
245229
fmap_demean=fmap_demean,
246-
use_syn=use_syn,
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force_syn=force_syn,
248-
use_aroma=use_aroma,
249-
aroma_melodic_dim=aroma_melodic_dim,
250-
err_on_aroma_warn=err_on_aroma_warn,
231+
freesurfer=freesurfer,
232+
hires=hires,
233+
ignore=ignore,
234+
layout=layout,
235+
longitudinal=longitudinal,
236+
low_mem=low_mem,
237+
medial_surface_nan=medial_surface_nan,
238+
name="single_subject_" + subject_id + "_wf",
239+
omp_nthreads=omp_nthreads,
240+
output_dir=output_dir,
241+
output_spaces=output_spaces,
251242
regressors_all_comps=regressors_all_comps,
252-
regressors_fd_th=regressors_fd_th,
253243
regressors_dvars_th=regressors_dvars_th,
244+
regressors_fd_th=regressors_fd_th,
245+
reportlets_dir=reportlets_dir,
246+
skull_strip_fixed_seed=skull_strip_fixed_seed,
247+
skull_strip_template=skull_strip_template,
248+
subject_id=subject_id,
249+
t2s_coreg=t2s_coreg,
250+
task_id=task_id,
251+
use_aroma=use_aroma,
252+
use_bbr=use_bbr,
253+
use_syn=use_syn,
254254
)
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256256
single_subject_wf.config['execution']['crashdump_dir'] = (
@@ -345,7 +345,7 @@ def init_single_subject_wf(
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('T1w', {}), ('fsnative', {})]),
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reportlets_dir='.',
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regressors_all_comps=False,
348-
regressors_dvars_th=1.5
348+
regressors_dvars_th=1.5,
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regressors_fd_th=0.5,
350350
skull_strip_fixed_seed=False,
351351
skull_strip_template='OASIS30ANTs',

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