File tree Expand file tree Collapse file tree 1 file changed +0
-21
lines changed Expand file tree Collapse file tree 1 file changed +0
-21
lines changed Original file line number Diff line number Diff line change @@ -647,27 +647,6 @@ jobs:
647
647
--output-spaces MNI152NLin2009cAsym:res-2 anat func \
648
648
--mem-mb 14336 --nthreads 4 -vv --debug compcor
649
649
- run : *check_outputs
650
- - run :
651
- name : Generate report with one artificial error
652
- command : |
653
- set -x
654
- sudo mv /tmp/${DATASET}/fmriprep/sub-100185.html \
655
- /tmp/${DATASET}/fmriprep/sub-100185_noerror.html
656
- UUID=$(grep uuid /tmp/${DATASET}/work/*/config.toml | cut -d\" -f 2 | tail -n 1)
657
- mkdir -p /tmp/${DATASET}/fmriprep/sub-100185/log/$UUID/
658
- cp /tmp/src/fmriprep/fmriprep/data/tests/crash_files/*.txt \
659
- /tmp/${DATASET}/fmriprep/sub-100185/log/$UUID/
660
- set +e
661
- fmriprep-docker -i nipreps/fmriprep:latest \
662
- -e FMRIPREP_DEV 1 --user $(id -u):$(id -g) \
663
- --config $PWD/nipype.cfg -w /tmp/${DATASET}/work \
664
- /tmp/data/${DATASET} /tmp/${DATASET}/fmriprep participant \
665
- --fs-no-reconall --sloppy --write-graph \
666
- --output-spaces MNI152NLin2009cAsym:res-2 anat func \
667
- --reports-only --config-file /tmp/${DATASET}/work/${UUID}/config.toml -vv
668
- RET=$?
669
- set -e
670
- [[ "$RET" -eq "0" ]] # ensure report was generated successfully
671
650
- run :
672
651
name : Clean working directory
673
652
when : on_success
You can’t perform that action at this time.
0 commit comments