MNT: Update environment

Author: effigies

env.yml

@@ -11,7 +11,7 @@ dependencies:
   - mkl=2022.1
   - mkl-service=2.4
   # Base scientific python stack; required by FSL, so pinned here
-  - numpy=1.24
+  - numpy=1.25
   - scipy=1.10
   - matplotlib=3.7
   - pandas=2.0

requirements.txt

@@ -4,7 +4,7 @@
 #
 #    pip-compile --extra=telemetry --resolver=backtracking
 #
-apscheduler==3.10.1
+apscheduler==3.10.3
     # via fmriprep (pyproject.toml)
 arrow==1.2.3
     # via codecarbon
@@ -14,40 +14,40 @@ attrs==23.1.0
     # via
     #   niworkflows
     #   sdcflows
-bids-validator==1.11.0
+bids-validator==1.12.0
     # via pybids
 bokeh==2.2.3
     # via tedana
-certifi==2023.5.7
+certifi==2023.7.22
     # via
     #   requests
     #   sentry-sdk
-charset-normalizer==3.1.0
+charset-normalizer==3.2.0
     # via requests
 ci-info==0.3.0
     # via
     #   etelemetry
     #   migas
-click==8.1.3
+click==8.1.7
     # via
     #   codecarbon
     #   nipype
     #   pybids
-codecarbon==2.2.3
+codecarbon==2.3.1
     # via fmriprep (pyproject.toml)
-contourpy==1.0.7
+contourpy==1.1.0
     # via matplotlib
 cycler==0.11.0
     # via matplotlib
-cython==0.29.35
+cython==3.0.0
     # via nitime
 docopt==0.6.2
     # via num2words
 etelemetry==0.3.0
     # via nipype
-filelock==3.12.0
+filelock==3.12.2
     # via nipype
-fonttools==4.39.4
+fonttools==4.42.0
     # via matplotlib
 formulaic==0.5.2
     # via pybids
@@ -59,9 +59,9 @@ h5py==3.8.0
     # via nitransforms
 idna==3.4
     # via requests
-imageio==2.31.0
+imageio==2.31.1
     # via scikit-image
-indexed-gzip==1.7.1
+indexed-gzip==1.8.3
     # via smriprep
 interface-meta==1.3.0
     # via formulaic
@@ -72,23 +72,23 @@ jinja2==3.0.1
     #   bokeh
     #   niworkflows
     #   tedana
-joblib==1.2.0
+joblib==1.3.2
     # via
     #   nilearn
     #   scikit-learn
 kiwisolver==1.4.4
     # via matplotlib
-lazy-loader==0.2
+lazy-loader==0.3
     # via scikit-image
 lockfile==0.12.2
     # via smriprep
-looseversion==1.2.0
+looseversion==1.3.0
     # via
     #   fmriprep (pyproject.toml)
     #   nipype
     #   niworkflows
     #   smriprep
-lxml==4.9.2
+lxml==4.9.3
     # via
     #   nilearn
     #   prov
@@ -138,7 +138,7 @@ nipype==1.8.6
     #   smriprep
 nitime==0.10.1
     # via fmriprep (pyproject.toml)
-nitransforms==22.0.0
+nitransforms==23.0.1
     # via
     #   fmriprep (pyproject.toml)
     #   niworkflows
@@ -150,7 +150,7 @@ niworkflows==1.8.1
     #   smriprep
 num2words==0.5.12
     # via pybids
-numpy==1.24.3
+numpy==1.25.2
     # via
     #   bokeh
     #   contourpy
@@ -188,7 +188,7 @@ packaging==23.1
     #   niworkflows
     #   scikit-image
     #   smriprep
-pandas==2.0.2
+pandas==2.0.3
     # via
     #   codecarbon
     #   fmriprep (pyproject.toml)
@@ -198,12 +198,14 @@ pandas==2.0.2
     #   pybids
     #   seaborn
     #   tedana
-pillow==9.5.0
+pillow==10.0.0
     # via
     #   bokeh
     #   imageio
     #   matplotlib
     #   scikit-image
+prometheus-client==0.17.1
+    # via codecarbon
 prov==2.0.0
     # via nipype
 psutil==5.9.5
@@ -212,7 +214,7 @@ psutil==5.9.5
     #   fmriprep (pyproject.toml)
 py-cpuinfo==9.0.0
     # via codecarbon
-pybids==0.16.1
+pybids==0.16.3
     # via
     #   fmriprep (pyproject.toml)
     #   niworkflows
@@ -242,12 +244,12 @@ pytz==2023.3
     #   pandas
 pywavelets==1.4.1
     # via scikit-image
-pyyaml==6.0
+pyyaml==6.0.1
     # via
     #   bokeh
     #   niworkflows
     #   smriprep
-rdflib==6.3.2
+rdflib==7.0.0
     # via
     #   nipype
     #   prov
@@ -262,7 +264,7 @@ scikit-image==0.21.0
     # via
     #   niworkflows
     #   sdcflows
-scikit-learn==1.2.2
+scikit-learn==1.3.0
     # via
     #   mapca
     #   nilearn
@@ -285,7 +287,7 @@ sdcflows==2.5.1
     # via fmriprep (pyproject.toml)
 seaborn==0.12.2
     # via niworkflows
-sentry-sdk==1.25.1
+sentry-sdk==1.29.2
     # via fmriprep (pyproject.toml)
 simplejson==3.19.1
     # via nipype
@@ -296,7 +298,7 @@ six==1.16.0
     #   python-dateutil
 smriprep==0.12.1
     # via fmriprep (pyproject.toml)
-sqlalchemy==2.0.15
+sqlalchemy==2.0.20
     # via pybids
 svgutils==0.3.4
     # via niworkflows
@@ -308,17 +310,17 @@ templateflow==23.0.0
     #   niworkflows
     #   sdcflows
     #   smriprep
-threadpoolctl==3.1.0
+threadpoolctl==3.2.0
     # via
     #   scikit-learn
     #   tedana
-tifffile==2023.4.12
+tifffile==2023.8.12
     # via scikit-image
 toml==0.10.2
     # via fmriprep (pyproject.toml)
-tornado==6.3.2
+tornado==6.3.3
     # via bokeh
-tqdm==4.65.0
+tqdm==4.66.1
     # via templateflow
 traits==6.3.2
     # via
@@ -327,7 +329,7 @@ traits==6.3.2
     #   sdcflows
 transforms3d==0.4.1
     # via niworkflows
-typing-extensions==4.6.3
+typing-extensions==4.7.1
     # via
     #   bokeh
     #   formulaic
@@ -336,12 +338,9 @@ tzdata==2023.3
     # via pandas
 tzlocal==5.0.1
     # via apscheduler
-urllib3==2.0.3
+urllib3==2.0.4
     # via
     #   requests
     #   sentry-sdk
 wrapt==1.15.0
     # via formulaic
-
-# The following packages are considered to be unsafe in a requirements file:
-# setuptools