MAINT: Update setup.cfg (flake8 and pytest)

- Ignore W503 (boolean operator after line break)
- Add settings section for pytest

Author: oesteban

fmriprep/utils/misc.py

@@ -9,5 +9,5 @@ def check_deps(workflow):
     return sorted(
         (node.interface.__class__.__name__, node.interface._cmd)
         for node in workflow._get_all_nodes()
-        if (hasattr(node.interface, '_cmd') and
-            which(node.interface._cmd.split()[0]) is None))
+        if (hasattr(node.interface, '_cmd')
+            and which(node.interface._cmd.split()[0]) is None))

fmriprep/workflows/bold/base.py

@@ -206,9 +206,11 @@ def init_func_preproc_wf(bold_file):
         fmaps = {'syn': False}
 
     # Short circuits: (True and True and (False or 'TooShort')) == 'TooShort'
-    run_stc = (bool(metadata.get("SliceTiming")) and
-               'slicetiming' not in config.workflow.ignore and
-               (_get_series_len(ref_file) > 4 or "TooShort"))
+    run_stc = (
+        bool(metadata.get("SliceTiming"))
+        and 'slicetiming' not in config.workflow.ignore
+        and (_get_series_len(ref_file) > 4 or "TooShort")
+    )
 
     # Build workflow
     workflow = Workflow(name=wf_name)

fmriprep/workflows/bold/tests/test_confounds.py

@@ -6,9 +6,11 @@
 from ..confounds import _add_volumes, _remove_volumes
 
 
-skip_pytest = pytest.mark.skipif(not os.getenv('FMRIPREP_REGRESSION_SOURCE') or
-                                 not os.getenv('FMRIPREP_REGRESSION_TARGETS'),
-                                 reason='FMRIPREP_REGRESSION_{SOURCE,TARGETS} env vars not set')
+skip_pytest = pytest.mark.skipif(
+    not os.getenv('FMRIPREP_REGRESSION_SOURCE')
+    or not os.getenv('FMRIPREP_REGRESSION_TARGETS'),
+    reason='FMRIPREP_REGRESSION_{SOURCE,TARGETS} env vars not set'
+)
 
 
 @skip_pytest

setup.cfg

@@ -106,3 +106,18 @@ parentdir_prefix =
 max-line-length = 99
 doctests = True
 exclude=*build/
+ignore =
+    W503
+per-file-ignores =
+    **/__init__.py : F401
+    docs/conf.py : E265
+
+[tool:pytest]
+norecursedirs = .git
+addopts = -svx --doctest-modules
+doctest_optionflags = ALLOW_UNICODE NORMALIZE_WHITESPACE ELLIPSIS
+env =
+    PYTHONHASHSEED=0
+filterwarnings =
+    ignore::DeprecationWarning
+junit_family=xunit2