REL: 23.2.0a3

Author: effigies

CHANGES.rst

@@ -39,12 +39,18 @@ Finally, a new resampling method has been added, to better account for
 susceptibility distortion and motion in a single shot resampling to a volumetric
 target space. We anticipate extending this to surface targets in the future.
 
+* FIX: Restore --ignore sbref functionality (#3180)
+* FIX: Retrieve atlas ROIs at requested density (#3179)
+* FIX: Keep minctracc executable in FreeSurfer installation (#3175)
+* FIX: Exclude echo entity from optimally combined derivatives (#3166)
+* FIX: Disable boldref-space outputs unless requested (#3159)
 * FIX: Tag memory estimates in resamplers (#3150)
 * FIX: Final revisions for next branch (#3134)
 * FIX: Minor fixes to work with MSMSulc-enabled smriprep-next (#3098)
 * FIX: Connect EPI-to-fieldmap transform (#3099)
 * FIX: Use Py2-compatible version file template for fmriprep-docker (#3101)
 * FIX: Update connections to unwarp_wf, convert ITK transforms to text (#3077)
+* ENH: Exclude non-steady-state volumes from confound correlation plot (#3171)
 * ENH: Pass FLAIR images to anatomical workflow builder to include in boilerplate (#3146)
 * ENH: Restore carpetplot and other final adjustments (#3131)
 * ENH: Restore CIFTI-2 generation (#3129)
@@ -55,10 +61,14 @@ target space. We anticipate extending this to surface targets in the future.
 * ENH: Add MSMSulc (#3085)
 * ENH: Add reporting workflow for BOLD fit (#3082)
 * ENH: Generate anatomical derivatives useful for resampling (#3081)
+* RF: Load reportlets interfaces from nireports rather than niworkflows (#3176, #3184)
+* RF: Separate goodvoxels mask creation from fsLR resampling (#3170)
 * RF: Write out anatomical template derivatives (#3136)
 * RF: Update primary bold workflow to incorporate single shot resampling (#3114)
 * RF: Update derivative cache spec, calculate per-BOLD, reuse boldref2fmap (#3078)
 * RF: Split fMRIPrep into fit and derivatives workflows (#2913)
+* RPT: Rename CSF/WM confounds in fMRIPlot (#3172)
+* TST: Add smoke tests for full workflow and most branching flags (#3155)
 * TST: Add smoke-tests for bold_fit_wf (#3152)
 * DOC: Fix documentation and description for init_bold_grayords_wf (#3051)
 * DOC: Minor updates in outputs.rst (#3148)
@@ -68,7 +78,7 @@ target space. We anticipate extending this to surface targets in the future.
 * MNT: Restore mritotal subcommands to Dockerfile (#3149)
 * MNT: Update smriprep to 0.13.1 (#3153)
 * MNT: optimise size of PNG files (#3145)
-* MNT: update vendored docs script `github_link.py` (#3144)
+* MNT: update vendored docs script ``github_link.py`` (#3144)
 * MNT: Update tedana pin, test on Python 3.12 (#3141)
 * MNT: Bump environment (#3132)
 * MNT: Bump version requirements (#3107)
@@ -81,6 +91,7 @@ target space. We anticipate extending this to surface targets in the future.
 * MNT: update update_zenodo.py script (#3042)
 * MNT: Fix welcome message formatting and instructions (#3039)
 * MNT: Python 3.11 should be supported (#3038)
+* CI: Bump actions/setup-python from 4 to 5 (#3181)
 * CI: Stop testing legacy layout (#3079)
 * CI: Improve tag detection for docker builds (#3066)
 * CI: Clean up pre-release builds (#3040)