Skip to content

Commit 8eb8215

Browse files
tsaloeffigies
andauthored
Track Sources for standard-space outputs (#3262)
References #3261. ## Changes proposed in this pull request - Track `Sources` for standard-space outputs --------- Co-authored-by: Chris Markiewicz <[email protected]>
1 parent 16e4455 commit 8eb8215

File tree

7 files changed

+28
-0
lines changed

7 files changed

+28
-0
lines changed

.circleci/ds005_partial_fasttrack_outputs.txt

Lines changed: 6 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -73,15 +73,21 @@ sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsnative_bold.func.
7373
sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsnative_bold.json
7474
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-fsLR_den-91k_bold.dtseries.nii
7575
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-fsLR_den-91k_bold.json
76+
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_boldref.json
7677
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_boldref.nii.gz
78+
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_desc-brain_mask.json
7779
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
7880
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.json
7981
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
82+
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin6Asym_boldref.json
8083
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin6Asym_boldref.nii.gz
84+
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin6Asym_desc-brain_mask.json
8185
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin6Asym_desc-brain_mask.nii.gz
8286
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin6Asym_desc-preproc_bold.json
8387
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin6Asym_desc-preproc_bold.nii.gz
88+
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_boldref.json
8489
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_boldref.nii.gz
90+
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_desc-brain_mask.json
8591
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_desc-brain_mask.nii.gz
8692
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_desc-preproc_bold.json
8793
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_desc-preproc_bold.nii.gz

.circleci/ds005_partial_outputs.txt

Lines changed: 6 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -95,15 +95,21 @@ sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsnative_bold.func.
9595
sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsnative_bold.json
9696
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-fsLR_den-91k_bold.dtseries.nii
9797
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-fsLR_den-91k_bold.json
98+
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_boldref.json
9899
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_boldref.nii.gz
100+
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_desc-brain_mask.json
99101
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
100102
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.json
101103
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
104+
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin6Asym_boldref.json
102105
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin6Asym_boldref.nii.gz
106+
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin6Asym_desc-brain_mask.json
103107
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin6Asym_desc-brain_mask.nii.gz
104108
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin6Asym_desc-preproc_bold.json
105109
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin6Asym_desc-preproc_bold.nii.gz
110+
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_boldref.json
106111
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_boldref.nii.gz
112+
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_desc-brain_mask.json
107113
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_desc-brain_mask.nii.gz
108114
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_desc-preproc_bold.json
109115
sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_desc-preproc_bold.nii.gz

.circleci/ds054_fasttrack_outputs.txt

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -46,7 +46,9 @@ sub-100185/func/sub-100185_task-machinegame_run-01_space-MNI152NLin2009cAsym_res
4646
sub-100185/func/sub-100185_task-machinegame_run-01_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.nii.gz
4747
sub-100185/func/sub-100185_task-machinegame_run-01_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
4848
sub-100185/func/sub-100185_task-machinegame_run-01_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.nii.gz
49+
sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_boldref.json
4950
sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_boldref.nii.gz
51+
sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_desc-brain_mask.json
5052
sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_desc-brain_mask.nii.gz
5153
sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_desc-preproc_bold.json
5254
sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_desc-preproc_bold.nii.gz
@@ -72,7 +74,9 @@ sub-100185/func/sub-100185_task-machinegame_run-02_space-MNI152NLin2009cAsym_res
7274
sub-100185/func/sub-100185_task-machinegame_run-02_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.nii.gz
7375
sub-100185/func/sub-100185_task-machinegame_run-02_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
7476
sub-100185/func/sub-100185_task-machinegame_run-02_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.nii.gz
77+
sub-100185/func/sub-100185_task-machinegame_run-02_space-T1w_boldref.json
7578
sub-100185/func/sub-100185_task-machinegame_run-02_space-T1w_boldref.nii.gz
79+
sub-100185/func/sub-100185_task-machinegame_run-02_space-T1w_desc-brain_mask.json
7680
sub-100185/func/sub-100185_task-machinegame_run-02_space-T1w_desc-brain_mask.nii.gz
7781
sub-100185/func/sub-100185_task-machinegame_run-02_space-T1w_desc-preproc_bold.json
7882
sub-100185/func/sub-100185_task-machinegame_run-02_space-T1w_desc-preproc_bold.nii.gz

.circleci/ds054_outputs.txt

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -56,7 +56,9 @@ sub-100185/func/sub-100185_task-machinegame_run-01_space-MNI152NLin2009cAsym_res
5656
sub-100185/func/sub-100185_task-machinegame_run-01_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.nii.gz
5757
sub-100185/func/sub-100185_task-machinegame_run-01_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
5858
sub-100185/func/sub-100185_task-machinegame_run-01_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.nii.gz
59+
sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_boldref.json
5960
sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_boldref.nii.gz
61+
sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_desc-brain_mask.json
6062
sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_desc-brain_mask.nii.gz
6163
sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_desc-preproc_bold.json
6264
sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_desc-preproc_bold.nii.gz
@@ -82,7 +84,9 @@ sub-100185/func/sub-100185_task-machinegame_run-02_space-MNI152NLin2009cAsym_res
8284
sub-100185/func/sub-100185_task-machinegame_run-02_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.nii.gz
8385
sub-100185/func/sub-100185_task-machinegame_run-02_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
8486
sub-100185/func/sub-100185_task-machinegame_run-02_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.nii.gz
87+
sub-100185/func/sub-100185_task-machinegame_run-02_space-T1w_boldref.json
8588
sub-100185/func/sub-100185_task-machinegame_run-02_space-T1w_boldref.nii.gz
89+
sub-100185/func/sub-100185_task-machinegame_run-02_space-T1w_desc-brain_mask.json
8690
sub-100185/func/sub-100185_task-machinegame_run-02_space-T1w_desc-brain_mask.nii.gz
8791
sub-100185/func/sub-100185_task-machinegame_run-02_space-T1w_desc-preproc_bold.json
8892
sub-100185/func/sub-100185_task-machinegame_run-02_space-T1w_desc-preproc_bold.nii.gz

.circleci/ds210_fasttrack_outputs.txt

Lines changed: 2 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -43,7 +43,9 @@ sub-02/func/sub-02_task-cuedSGT_run-01_from-boldref_to-T1w_mode-image_desc-coreg
4343
sub-02/func/sub-02_task-cuedSGT_run-01_from-boldref_to-T1w_mode-image_desc-coreg_xfm.txt
4444
sub-02/func/sub-02_task-cuedSGT_run-01_from-orig_to-boldref_mode-image_desc-hmc_xfm.json
4545
sub-02/func/sub-02_task-cuedSGT_run-01_from-orig_to-boldref_mode-image_desc-hmc_xfm.txt
46+
sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_boldref.json
4647
sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_boldref.nii.gz
48+
sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.json
4749
sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
4850
sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.json
4951
sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz

.circleci/ds210_outputs.txt

Lines changed: 2 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -53,7 +53,9 @@ sub-02/func/sub-02_task-cuedSGT_run-01_from-boldref_to-T1w_mode-image_desc-coreg
5353
sub-02/func/sub-02_task-cuedSGT_run-01_from-boldref_to-T1w_mode-image_desc-coreg_xfm.txt
5454
sub-02/func/sub-02_task-cuedSGT_run-01_from-orig_to-boldref_mode-image_desc-hmc_xfm.json
5555
sub-02/func/sub-02_task-cuedSGT_run-01_from-orig_to-boldref_mode-image_desc-hmc_xfm.txt
56+
sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_boldref.json
5657
sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_boldref.nii.gz
58+
sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.json
5759
sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
5860
sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.json
5961
sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz

fmriprep/workflows/bold/outputs.py

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -790,6 +790,7 @@ def init_ds_volumes_wf(
790790
('cohort', 'cohort'),
791791
('resolution', 'resolution'),
792792
]),
793+
(sources, ds_bold, [('out', 'Sources')]),
793794
]) # fmt:skip
794795

795796
resample_ref = pe.Node(
@@ -881,6 +882,9 @@ def init_ds_volumes_wf(
881882
('resolution', 'resolution'),
882883
])
883884
for datasink in datasinks
885+
] + [
886+
(sources, datasink, [('out', 'Sources')])
887+
for datasink in datasinks
884888
] + [
885889
(resampler, datasink, [('output_image', 'in_file')])
886890
for resampler, datasink in zip(resamplers, datasinks, strict=False)

0 commit comments

Comments
 (0)