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Merge pull request #1976 from effigies/doc/fix_svg_scaling
DOC/FIX: Remove unusable scale option to SVG figures
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docs/faq.rst

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@@ -133,7 +133,6 @@ Below are some benchmark data that have been computed on a high performance clus
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CPUs and 64 GB of physical memory:
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.. figure:: _static/fmriprep_benchmark.svg
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**Compute Time**: time in hours to complete the preprocessing for all subjects. **Physical Memory**: the maximum of RAM usage
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used across all fMRIPrep processes as reported by the HCP job manager. **Virtual Memory**: the maximum of virtual memory used

docs/outputs.rst

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@@ -453,7 +453,6 @@ Some of the estimated confounds are plotted with a "carpet" visualization of the
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An example of these plots follows:
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.. figure:: _static/sub-01_task-mixedgamblestask_run-01_bold_carpetplot.svg
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The figure shows on top several confounds estimated for the BOLD series:
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global signals ('GlobalSignal', 'WM', 'GM'), standardized DVARS ('stdDVARS'),
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component, ordered by descending singular value.
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.. figure:: _static/sub-01_task-rest_compcor.svg
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The figure displays the cumulative variance explained by components for each
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of four CompCor decompositions (left to right: anatomical CSF mask, anatomical
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to which tissue-specific regressors correlate with global signal.
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.. figure:: _static/sub-01_task-mixedgamblestask_run-01_confounds_correlation.svg
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The left-hand panel shows the matrix of correlations among selected confound
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time series as a heat-map.

docs/workflows.rst

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An example of brain extraction is shown below:
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.. figure:: _static/brainextraction_t1.svg
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Brain extraction
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Once the brain mask is computed, FSL ``fast`` is utilized for brain tissue segmentation.
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.. figure:: _static/segmentation.svg
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Brain tissue segmentation.
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.. figure:: _static/T1MNINormalization.svg
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Animation showing spatial normalization of T1w onto the ``MNI152NLin2009cAsym`` template.
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Reconstructed white and pial surfaces are included in the report.
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.. figure:: _static/reconall.svg
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Surface reconstruction (FreeSurfer)
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BOLD series into the T1w image of the same subject <bold_reg>`.
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.. figure:: _static/brainextraction.svg
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Calculation of a brain mask from the BOLD series.
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@@ -425,7 +420,6 @@ Susceptibility Distortion Correction (SDC)
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:mod:`fmriprep.workflows.fieldmap.base.init_sdc_wf`
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.. figure:: _static/unwarping.svg
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Applying susceptibility-derived distortion correction, based on
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fieldmap estimation.
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(FreeSurfer's ``?h.white`` surfaces) is calculated by the ``bbregister`` routine.
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.. figure:: _static/EPIT1Normalization.svg
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Animation showing :abbr:`EPI (echo-planar imaging)` to T1w registration (FreeSurfer ``bbregister``)
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A visualization of the AROMA component classification is also included in the HTML reports.
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.. figure:: _static/aroma.svg
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Maps created with maximum intensity projection (glass brain) with a black
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brain outline.

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