@@ -118,15 +118,13 @@ brain extraction workflow:
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An example of brain extraction is shown below:
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.. figure :: _static/brainextraction_t1.svg
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Brain extraction
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Once the brain mask is computed, FSL ``fast `` is utilized for brain tissue segmentation.
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.. figure :: _static/segmentation.svg
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Brain tissue segmentation.
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@@ -138,7 +136,6 @@ be set to resample the preprocessed data onto the final output spaces.
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.. figure :: _static/T1MNINormalization.svg
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Animation showing spatial normalization of T1w onto the ``MNI152NLin2009cAsym `` template.
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@@ -244,7 +241,6 @@ details.
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Reconstructed white and pial surfaces are included in the report.
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.. figure :: _static/reconall.svg
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Surface reconstruction (FreeSurfer)
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@@ -360,7 +356,6 @@ workflow <bold_hmc>` and the :ref:`registration workflow to map
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BOLD series into the T1w image of the same subject <bold_reg>`.
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.. figure :: _static/brainextraction.svg
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Calculation of a brain mask from the BOLD series.
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@@ -425,7 +420,6 @@ Susceptibility Distortion Correction (SDC)
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:mod: `fmriprep.workflows.fieldmap.base.init_sdc_wf `
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.. figure :: _static/unwarping.svg
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Applying susceptibility-derived distortion correction, based on
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fieldmap estimation.
@@ -482,7 +476,6 @@ of each run and the reconstructed subject using the gray/white matter boundary
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(FreeSurfer's ``?h.white `` surfaces) is calculated by the ``bbregister `` routine.
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.. figure :: _static/EPIT1Normalization.svg
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Animation showing :abbr: `EPI (echo-planar imaging)` to T1w registration (FreeSurfer ``bbregister``)
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@@ -630,7 +623,6 @@ melodic's estimation of components.
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A visualization of the AROMA component classification is also included in the HTML reports.
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.. figure :: _static/aroma.svg
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Maps created with maximum intensity projection (glass brain) with a black
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brain outline.
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