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[skip ds005][skip ds054][skip ds210] fix OASIS template name (OASIS30ANTs)
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-6
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docs/workflows.rst

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -31,7 +31,7 @@ is presented below:
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reportlets_dir='.',
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output_dir='.',
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bids_dir='.',
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skull_strip_template='OASIS',
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skull_strip_template='OASIS30ANTs',
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skull_strip_fixed_seed=False,
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template='MNI152NLin2009cAsym',
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output_spaces=['T1w', 'fsnative', 'template', 'fsaverage5'],
@@ -70,7 +70,7 @@ T1w/T2w preprocessing
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template='MNI152NLin2009cAsym',
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output_spaces=['T1w', 'fsnative',
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'template', 'fsaverage5'],
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skull_strip_template='OASIS',
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skull_strip_template='OASIS30ANTs',
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skull_strip_fixed_seed=False,
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freesurfer=True,
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longitudinal=False,

fmriprep/workflows/base.py

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -67,7 +67,7 @@ def init_fmriprep_wf(subject_list, task_id, echo_idx, run_uuid, work_dir, output
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longitudinal=False,
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t2s_coreg=False,
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omp_nthreads=1,
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skull_strip_template='OASIS',
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skull_strip_template='OASIS30ANTs',
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skull_strip_fixed_seed=False,
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freesurfer=True,
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output_spaces=['T1w', 'fsnative',
@@ -121,7 +121,7 @@ def init_fmriprep_wf(subject_list, task_id, echo_idx, run_uuid, work_dir, output
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omp_nthreads : int
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Maximum number of threads an individual process may use
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skull_strip_template : str
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Name of ANTs skull-stripping template ('OASIS' or 'NKI')
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Name of ANTs skull-stripping template ('OASIS30ANTs' or 'NKI')
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skull_strip_fixed_seed : bool
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Do not use a random seed for skull-stripping - will ensure
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run-to-run replicability when used with --omp-nthreads 1
@@ -266,7 +266,7 @@ def init_single_subject_wf(subject_id, task_id, echo_idx, name, reportlets_dir,
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longitudinal=False,
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t2s_coreg=False,
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omp_nthreads=1,
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skull_strip_template='OASIS',
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skull_strip_template='OASIS30ANTs',
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skull_strip_fixed_seed=False,
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freesurfer=True,
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template='MNI152NLin2009cAsym',
@@ -313,7 +313,7 @@ def init_single_subject_wf(subject_id, task_id, echo_idx, name, reportlets_dir,
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omp_nthreads : int
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Maximum number of threads an individual process may use
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skull_strip_template : str
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Name of ANTs skull-stripping template ('OASIS' or 'NKI')
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Name of ANTs skull-stripping template ('OASIS30ANTs' or 'NKI')
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skull_strip_fixed_seed : bool
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Do not use a random seed for skull-stripping - will ensure
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run-to-run replicability when used with --omp-nthreads 1

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