@@ -67,7 +67,7 @@ def init_fmriprep_wf(subject_list, task_id, echo_idx, run_uuid, work_dir, output
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longitudinal=False,
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t2s_coreg=False,
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omp_nthreads=1,
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- skull_strip_template='OASIS ',
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+ skull_strip_template='OASIS30ANTs ',
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skull_strip_fixed_seed=False,
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freesurfer=True,
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output_spaces=['T1w', 'fsnative',
@@ -121,7 +121,7 @@ def init_fmriprep_wf(subject_list, task_id, echo_idx, run_uuid, work_dir, output
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omp_nthreads : int
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Maximum number of threads an individual process may use
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skull_strip_template : str
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- Name of ANTs skull-stripping template ('OASIS ' or 'NKI')
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+ Name of ANTs skull-stripping template ('OASIS30ANTs ' or 'NKI')
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skull_strip_fixed_seed : bool
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Do not use a random seed for skull-stripping - will ensure
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run-to-run replicability when used with --omp-nthreads 1
@@ -266,7 +266,7 @@ def init_single_subject_wf(subject_id, task_id, echo_idx, name, reportlets_dir,
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longitudinal=False,
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t2s_coreg=False,
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omp_nthreads=1,
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- skull_strip_template='OASIS ',
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+ skull_strip_template='OASIS30ANTs ',
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skull_strip_fixed_seed=False,
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freesurfer=True,
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template='MNI152NLin2009cAsym',
@@ -313,7 +313,7 @@ def init_single_subject_wf(subject_id, task_id, echo_idx, name, reportlets_dir,
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omp_nthreads : int
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Maximum number of threads an individual process may use
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skull_strip_template : str
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- Name of ANTs skull-stripping template ('OASIS ' or 'NKI')
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+ Name of ANTs skull-stripping template ('OASIS30ANTs ' or 'NKI')
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skull_strip_fixed_seed : bool
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Do not use a random seed for skull-stripping - will ensure
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run-to-run replicability when used with --omp-nthreads 1
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