@@ -427,53 +427,52 @@ def init_ica_aroma_wf(template, metadata, mem_gb, omp_nthreads,
427
427
428
428
**Parameters**
429
429
430
- aroma_melodic_dim: int or None
431
- Set the dimensionality of the Melodic ICA decomposition
432
- If None, MELODIC automatically estimates dimensionality.
433
- ignore_aroma_err : bool
434
- Do not fail on ICA-AROMA errors
435
- mem_gb : float
436
- Size of BOLD file in GB
437
- metadata : dict
438
- BIDS metadata for BOLD file
439
- name : str
440
- Name of workflow (default: ``bold_mni_trans_wf``)
441
- omp_nthreads : int
442
- Maximum number of threads an individual process may use
443
430
template : str
444
431
Spatial normalization template used as target when that
445
432
registration step was previously calculated with
446
433
:py:func:`~fmriprep.workflows.bold.registration.init_bold_reg_wf`.
447
434
The template must be one of the MNI templates (fMRIPrep uses
448
435
``MNI152NLin2009cAsym`` by default).
436
+ metadata : dict
437
+ BIDS metadata for BOLD file
438
+ mem_gb : float
439
+ Size of BOLD file in GB
440
+ omp_nthreads : int
441
+ Maximum number of threads an individual process may use
442
+ name : str
443
+ Name of workflow (default: ``bold_mni_trans_wf``)
449
444
susan_fwhm : float
450
445
Kernel width (FWHM in mm) for the smoothing step with
451
446
FSL ``susan`` (default: 6.0mm)
452
447
use_fieldwarp : bool
453
448
Include SDC warp in single-shot transform from BOLD to MNI
454
-
449
+ ignore_aroma_err : bool
450
+ Do not fail on ICA-AROMA errors
451
+ aroma_melodic_dim: int or None
452
+ Set the dimensionality of the Melodic ICA decomposition
453
+ If None, MELODIC automatically estimates dimensionality.
455
454
456
455
**Inputs**
457
- bold_mask
458
- BOLD series mask in template space
456
+
457
+ itk_bold_to_t1
458
+ Affine transform from ``ref_bold_brain`` to T1 space (ITK format)
459
+ t1_2_mni_forward_transform
460
+ ANTs-compatible affine-and-warp transform file
461
+ name_source
462
+ BOLD series NIfTI file
463
+ Used to recover original information lost during processing
464
+ skip_vols
465
+ number of non steady state volumes
459
466
bold_split
460
467
Individual 3D BOLD volumes, not motion corrected
461
- fieldwarp
462
- a :abbr:`DFM (displacements field map)` in ITK format
468
+ bold_mask
469
+ BOLD series mask in template space
463
470
hmc_xforms
464
471
List of affine transforms aligning each volume to ``ref_image`` in ITK format
465
- itk_bold_to_t1
466
- Affine transform from ``ref_bold_brain`` to T1 space ( ITK format)
472
+ fieldwarp
473
+ a :abbr:`DFM (displacements field map)` in ITK format
467
474
movpar_file
468
475
SPM-formatted motion parameters file
469
- skip_vols
470
- number of non steady state volumes
471
- name_source
472
- BOLD series NIfTI file
473
- Used to recover original information lost during processing
474
- t1_2_mni_forward_transform
475
- ANTs-compatible affine-and-warp transform file
476
-
477
476
478
477
**Outputs**
479
478
0 commit comments