@@ -11,11 +11,11 @@ as previous versions. ``minimal`` will produce only the minimum necessary to
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deterministically generate the remaining derivatives. ``resampling `` will produce
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some additional derivatives, intended to simplify resampling with other tools.
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- The ``--derivatives `` flag takes arguments of the form ``name=/path/to/dir ``.
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- If provided, fMRIPrep will read the specified directories for pre-computed
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- derivatives. If a derivative is found, it will be used instead of computing
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- it from scratch. If a derivative is not found, fMRIPrep will compute it and
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- proceed as usual.
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+ The ``--derivatives `` flag takes arguments of the form ``name=/path/to/dir ``,
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+ for example `` --derivatives anat=$SMRIPREP_DIR ``. If provided, fMRIPrep will
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+ read the specified directories for pre-computed derivatives. If a derivative is
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+ found, it will be used instead of computing it from scratch. If a derivative is
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+ not found, fMRIPrep will compute it and proceed as usual.
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Taken together, these features can allow a dataset provider to run a minimal
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fMRIPrep run, targeting many output spaces, while a user can then run a
@@ -24,9 +24,16 @@ spaces they need. Another use case is to provide an precomputed derivative
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to override the default fMRIPrep behavior, enabling easier workarounds for
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bugs or experimentation with alternatives.
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- Additionally, this release includes a number of bug fixes and minor improvements.
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- In particular, susceptibility distortion correction has been improved for
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- PEPolar, phase difference and direct fieldmaps.
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+ Additionally, this release includes a number of bug fixes and improvements.
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+ This release adds support for MSM-Sulc, improving the alignment of subject
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+ surfaces to the fsLR template. This process is enabled by default, but may
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+ be disabled with the ``--no-msm `` flag.
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+
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+ This release resolves a number of issues with fieldmaps inducing distortions
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+ during correction. Phase difference and direct fieldmaps are now masked correctly,
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+ preventing the overestimation of distortions outside the brain. Additionally,
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+ we now implement Jacobian weighting during unwarping, which corrects for compression
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+ and expansion effects on signal intensity.
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Finally, a new resampling method has been added, to better account for
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susceptibility distortion and motion in a single shot resampling to a volumetric
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