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oestebanoesteban
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_roi -> _dseg (incl. functionals)
1 parent 46411d3 commit aa0841b

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6 files changed

+24
-24
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6 files changed

+24
-24
lines changed

‎.circleci/ds005_outputs.txt

Lines changed: 8 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -9,10 +9,10 @@ fmriprep/sub-01/anat
99
fmriprep/sub-01/anat/sub-01_desc-brain_mask.nii.gz
1010
fmriprep/sub-01/anat/sub-01_desc-preproc_T1w.nii.gz
1111
fmriprep/sub-01/anat/sub-01_dseg.nii.gz
12-
fmriprep/sub-01/anat/sub-01_from-MNI152NLin2009cAsym_to-T1w_xfm.h5
13-
fmriprep/sub-01/anat/sub-01_from-orig_to-T1w_xfm.txt
14-
fmriprep/sub-01/anat/sub-01_from-T1w_to-fsnative_xfm.txt
15-
fmriprep/sub-01/anat/sub-01_from-T1w_to-MNI152NLin2009cAsym_xfm.h5
12+
fmriprep/sub-01/anat/sub-01_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
13+
fmriprep/sub-01/anat/sub-01_from-orig_to-T1w_mode-image_xfm.txt
14+
fmriprep/sub-01/anat/sub-01_from-T1w_to-fsnative_mode-image_xfm.txt
15+
fmriprep/sub-01/anat/sub-01_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
1616
fmriprep/sub-01/anat/sub-01_hemi-L_inflated.surf.gii
1717
fmriprep/sub-01/anat/sub-01_hemi-L_midthickness.surf.gii
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fmriprep/sub-01/anat/sub-01_hemi-L_pial.surf.gii
@@ -46,8 +46,8 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-MNI152NLin2009cAs
4646
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-MNI152NLin2009cAsym_variant-smoothAROMAnonaggr_preproc.nii.gz
4747
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_boldref.nii.gz
4848
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_brainmask.nii.gz
49-
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_label-aparcaseg_roi.nii.gz
50-
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_label-aseg_roi.nii.gz
49+
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_label-aparcaseg_dseg.nii.gz
50+
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_label-aseg_dseg.nii.gz
5151
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_preproc.nii.gz
5252
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_AROMAnoiseICs.csv
5353
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_confounds.tsv
@@ -62,8 +62,8 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAs
6262
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-MNI152NLin2009cAsym_variant-smoothAROMAnonaggr_preproc.nii.gz
6363
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_boldref.nii.gz
6464
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_brainmask.nii.gz
65-
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_label-aparcaseg_roi.nii.gz
66-
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_label-aseg_roi.nii.gz
65+
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_label-aparcaseg_dseg.nii.gz
66+
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_label-aseg_dseg.nii.gz
6767
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_preproc.nii.gz
6868
fmriprep/sub-01.html
6969
/tmp/ds005/derivatives

‎.circleci/ds005_partial_outputs.txt

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -9,10 +9,10 @@ fmriprep/sub-01/anat
99
fmriprep/sub-01/anat/sub-01_desc-brain_mask.nii.gz
1010
fmriprep/sub-01/anat/sub-01_desc-preproc_T1w.nii.gz
1111
fmriprep/sub-01/anat/sub-01_dseg.nii.gz
12-
fmriprep/sub-01/anat/sub-01_from-MNI152NLin2009cAsym_to-T1w_xfm.h5
13-
fmriprep/sub-01/anat/sub-01_from-orig_to-T1w_xfm.txt
14-
fmriprep/sub-01/anat/sub-01_from-T1w_to-fsnative_xfm.txt
15-
fmriprep/sub-01/anat/sub-01_from-T1w_to-MNI152NLin2009cAsym_xfm.h5
12+
fmriprep/sub-01/anat/sub-01_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
13+
fmriprep/sub-01/anat/sub-01_from-orig_to-T1w_mode-image_xfm.txt
14+
fmriprep/sub-01/anat/sub-01_from-T1w_to-fsnative_mode-image_xfm.txt
15+
fmriprep/sub-01/anat/sub-01_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
1616
fmriprep/sub-01/anat/sub-01_hemi-L_inflated.surf.gii
1717
fmriprep/sub-01/anat/sub-01_hemi-L_midthickness.surf.gii
1818
fmriprep/sub-01/anat/sub-01_hemi-L_pial.surf.gii
@@ -46,8 +46,8 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-MNI152NLin2009cAs
4646
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-MNI152NLin2009cAsym_variant-smoothAROMAnonaggr_preproc.nii.gz
4747
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_boldref.nii.gz
4848
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_brainmask.nii.gz
49-
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_label-aparcaseg_roi.nii.gz
50-
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_label-aseg_roi.nii.gz
49+
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_label-aparcaseg_dseg.nii.gz
50+
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_label-aseg_dseg.nii.gz
5151
fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_preproc.nii.gz
5252
fmriprep/sub-01.html
5353
/tmp/ds005/derivatives_partial

‎.circleci/ds054_outputs.txt

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -9,9 +9,9 @@ fmriprep/sub-100185/anat
99
fmriprep/sub-100185/anat/sub-100185_desc-brain_mask.nii.gz
1010
fmriprep/sub-100185/anat/sub-100185_desc-preproc_T1w.nii.gz
1111
fmriprep/sub-100185/anat/sub-100185_dseg.nii.gz
12-
fmriprep/sub-100185/anat/sub-100185_from-MNI152NLin2009cAsym_to-T1w_xfm.h5
13-
fmriprep/sub-100185/anat/sub-100185_from-orig_to-T1w_xfm.txt
14-
fmriprep/sub-100185/anat/sub-100185_from-T1w_target-MNI152NLin2009cAsym_xfm.h5
12+
fmriprep/sub-100185/anat/sub-100185_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
13+
fmriprep/sub-100185/anat/sub-100185_from-orig_to-T1w_mode-image_xfm.txt
14+
fmriprep/sub-100185/anat/sub-100185_from-T1w_target-MNI152NLin2009cAsym_mode-image_xfm.h5
1515
fmriprep/sub-100185/anat/sub-100185_label-CSF_probseg.nii.gz
1616
fmriprep/sub-100185/anat/sub-100185_label-GM_probseg.nii.gz
1717
fmriprep/sub-100185/anat/sub-100185_label-WM_probseg.nii.gz

‎.circleci/ds210_outputs.txt

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -9,9 +9,9 @@ fmriprep/sub-02/anat
99
fmriprep/sub-02/anat/sub-02_desc-brain_mask.nii.gz
1010
fmriprep/sub-02/anat/sub-02_desc-preproc_T1w.nii.gz
1111
fmriprep/sub-02/anat/sub-02_dseg.nii.gz
12-
fmriprep/sub-02/anat/sub-02_from-MNI152NLin2009cAsym_to-T1w_xfm.h5
13-
fmriprep/sub-02/anat/sub-02_from-orig_to-T1w_xfm.txt
14-
fmriprep/sub-02/anat/sub-02_from-T1w_to-MNI152NLin2009cAsym_xfm.h5
12+
fmriprep/sub-02/anat/sub-02_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
13+
fmriprep/sub-02/anat/sub-02_from-orig_to-T1w_mode-image_xfm.txt
14+
fmriprep/sub-02/anat/sub-02_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
1515
fmriprep/sub-02/anat/sub-02_label-CSF_probseg.nii.gz
1616
fmriprep/sub-02/anat/sub-02_label-GM_probseg.nii.gz
1717
fmriprep/sub-02/anat/sub-02_label-WM_probseg.nii.gz

‎fmriprep/workflows/anatomical.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1313,10 +1313,10 @@ def init_anat_derivatives_wf(output_dir, output_spaces, template, freesurfer,
13131313

13141314
if freesurfer:
13151315
ds_t1_fsaseg = pe.Node(
1316-
DerivativesDataSink(base_directory=output_dir, suffix='label-aseg_roi'),
1316+
DerivativesDataSink(base_directory=output_dir, suffix='label-aseg_dseg'),
13171317
name='ds_t1_fsaseg', run_without_submitting=True)
13181318
ds_t1_fsparc = pe.Node(
1319-
DerivativesDataSink(base_directory=output_dir, suffix='label-aparcaseg_roi'),
1319+
DerivativesDataSink(base_directory=output_dir, suffix='label-aparcaseg_dseg'),
13201320
name='ds_t1_fsparc', run_without_submitting=True)
13211321
workflow.connect([
13221322
(inputnode, lta_2_itk, [('t1_2_fsnative_forward_transform', 'in_lta')]),

‎fmriprep/workflows/bold/base.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -885,11 +885,11 @@ def init_func_derivatives_wf(output_dir, output_spaces, template, freesurfer,
885885

886886
if freesurfer:
887887
ds_bold_aseg_t1 = pe.Node(DerivativesDataSink(
888-
base_directory=output_dir, suffix='space-T1w_label-aseg_roi'),
888+
base_directory=output_dir, suffix='space-T1w_label-aseg_dseg'),
889889
name='ds_bold_aseg_t1', run_without_submitting=True,
890890
mem_gb=DEFAULT_MEMORY_MIN_GB)
891891
ds_bold_aparc_t1 = pe.Node(DerivativesDataSink(
892-
base_directory=output_dir, suffix='space-T1w_label-aparcaseg_roi'),
892+
base_directory=output_dir, suffix='space-T1w_label-aparcaseg_dseg'),
893893
name='ds_bold_aparc_t1', run_without_submitting=True,
894894
mem_gb=DEFAULT_MEMORY_MIN_GB)
895895
workflow.connect([

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