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I put --echo-idx in the anat-only call...
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.circleci/config.yml

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@@ -730,7 +730,7 @@ jobs:
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/tmp/data/${DATASET} /tmp/${DATASET}/fmriprep participant \
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--fs-no-reconall --sloppy --write-graph \
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--output-spaces MNI152NLin2009cAsym \
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--mem-mb 14336 --nthreads 4 --anat-only -vv --notrack --echo-idx 1
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--mem-mb 14336 --nthreads 4 --anat-only -vv --notrack
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fi
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- run:
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name: Clean-up after anatomical run
@@ -773,7 +773,7 @@ jobs:
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--fs-no-reconall --use-syn-sdc --ignore slicetiming \
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--dummy-scans 1 --sloppy --write-graph \
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--output-spaces MNI152NLin2009cAsym \
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--mem-mb 14336 --nthreads 4 -vv
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--mem-mb 14336 --nthreads 4 -vv --echo-idx 1
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- run: *check_outputs
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- run:
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name: Clean working directory

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