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use NaN failure mode for empty masks [skip ci]
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fmriprep/workflows/bold/confounds.py

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -208,13 +208,14 @@ def init_bold_confs_wf(mem_gb, metadata, return_all_components=False,
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tcompcor = pe.Node(
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TCompCor(components_file='tcompcor.tsv', header_prefix='t_comp_cor_', pre_filter='cosine',
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save_pre_filter=True, save_metadata=True, percentile_threshold=.05),
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save_pre_filter=True, save_metadata=True, percentile_threshold=.05,
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failure_mode='NaN'),
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name="tcompcor", mem_gb=mem_gb)
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acompcor = pe.Node(
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ACompCor(components_file='acompcor.tsv', header_prefix='a_comp_cor_', pre_filter='cosine',
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save_pre_filter=True, save_metadata=True, mask_names=['combined', 'CSF', 'WM'],
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merge_method='none'),
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merge_method='none', failure_mode='NaN'),
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name="acompcor", mem_gb=mem_gb)
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# Set number of components

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