first test of nipreps/niworkflows#318

oesteban · oesteban · commit b0ea7c42695b · 2019-03-08T20:51:32.000-08:00
diff --git a/fmriprep/__about__.py b/fmriprep/__about__.py
@@ -104,6 +104,8 @@
 
 
 LINKS_REQUIRES = [
+    'git+https://github.com/oesteban/niworkflows.git@'
+    '7dd12a501dc9eb6c0bbfc699b99742d3481ae9a2#egg=niworkflows-0.8.0'
 ]
 
 TESTS_REQUIRES = [
diff --git a/fmriprep/workflows/bold/base.py b/fmriprep/workflows/bold/base.py
@@ -879,7 +879,7 @@ def init_func_derivatives_wf(output_dir, output_spaces, template, freesurfer,
     if 'T1w' in output_spaces:
         ds_bold_t1 = pe.Node(
             DerivativesDataSink(base_directory=output_dir, space='T1w', desc='preproc',
-                                keep_dtype=True, compress=True),
+                                keep_dtype=True, compress=True, SkullStripped=False),
             name='ds_bold_t1', run_without_submitting=True,
             mem_gb=DEFAULT_MEMORY_MIN_GB)
         ds_bold_t1_ref = pe.Node(
@@ -920,7 +920,7 @@ def init_func_derivatives_wf(output_dir, output_spaces, template, freesurfer,
     if 'template' in output_spaces:
         ds_bold_mni = pe.Node(
             DerivativesDataSink(base_directory=output_dir, space=template, desc='preproc',
-                                keep_dtype=True, compress=True),
+                                keep_dtype=True, compress=True, SkullStripped=False),
             name='ds_bold_mni', run_without_submitting=True,
             mem_gb=DEFAULT_MEMORY_MIN_GB)
         ds_bold_mni_ref = pe.Node(
diff --git a/requirements.txt b/requirements.txt
@@ -1 +1,2 @@
+git+https://github.com/oesteban/niworkflows.git@7dd12a501dc9eb6c0bbfc699b99742d3481ae9a2#egg=niworkflows-0.8.0
 smriprep<0.2.0a0,>=0.1.0

Original file line number	Diff line number	Diff line change
`@@ -104,6 +104,8 @@`
`104`	`104`
`105`	`105`
`106`	`106`	`LINKS_REQUIRES = [`
	`107`	`+ 'git+https://github.com/oesteban/niworkflows.git@'`
	`108`	`+ '7dd12a501dc9eb6c0bbfc699b99742d3481ae9a2#egg=niworkflows-0.8.0'`
`107`	`109`	`]`
`108`	`110`
`109`	`111`	`TESTS_REQUIRES = [`
Original file line number	Diff line number	Diff line change
`@@ -1 +1,2 @@`
	`1`	`+git+https://github.com/oesteban/niworkflows.git@7dd12a501dc9eb6c0bbfc699b99742d3481ae9a2#egg=niworkflows-0.8.0`
`1`	`2`	`smriprep<0.2.0a0,>=0.1.0`