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FIX: Pass fmriprep output directory to anatomical workflow
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fmriprep/workflows/base.py

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@@ -305,7 +305,7 @@ def init_single_subject_wf(subject_id: str):
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# Build the workflow
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anat_fit_wf = init_anat_fit_wf(
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bids_root=str(config.execution.bids_dir),
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output_dir=str(config.execution.output_dir),
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output_dir=str(config.execution.fmriprep_dir),
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freesurfer=config.workflow.run_reconall,
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hires=config.workflow.hires,
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longitudinal=config.workflow.longitudinal,

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